RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 FAM149B1Q96BN6 582 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 LRRC4CQ9HCJ2 640 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 TTC7AQ9ULT0 858 aaPredicted RBP12.96□□□□□ -0.33
CIITA-202ENST00000381835 CDY1Q9Y6F8 540 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 LAMA3Q16787 3333 aa12.96□□□□□ -0.33
CIITA-202ENST00000381835 HHLA1C9JL84 531 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 PPFIA2O75334 1257 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 SOD2P04179 222 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 TAS2R40P59535 323 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 DR1Q01658 176 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 ZNF211Q13398 564 aaPredicted RBP12.96□□□□□ -0.34
CIITA-202ENST00000381835 DCAF12L1Q5VU92 463 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 TRNP1Q6NT89 227 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 HOOK3Q86VS8 718 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 RNF168Q8IYW5 571 aaPredicted RBP12.96□□□□□ -0.34
CIITA-202ENST00000381835 FBXO22Q8NEZ5 403 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 ULBP1Q9BZM6 244 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 NR2E1Q9Y466 385 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 PCDHB5Q9Y5E4 795 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 PCDHB12Q9Y5F1 795 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 PCDHA3Q9Y5H8 950 aa12.96□□□□□ -0.34
CIITA-202ENST00000381835 GOLGA6L10A0A0M3HER8 536 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 C2CD4BA6NLJ0 364 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 TLL1O43897 1013 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 TBC1D4O60343 1298 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 USP17L7P0C7H9 530 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 TCF4P15884 667 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 GPD1P21695 349 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 PEX5P50542 639 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 MRPS5P82675 430 aaKnown RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 ADCY1Q08828 1119 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 IFRD2Q12894 506 aaPredicted RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 BYSLQ13895 437 aaKnown RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 PSMD5Q16401 504 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CDO1Q16878 200 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SPRED3Q2MJR0 410 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SPDYCQ5MJ68 293 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CYB5D1Q6P9G0 228 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 PARP9Q8IXQ6 854 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 TTC9BQ8N6N2 239 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 MDM1Q8TC05 714 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 FNIP1Q8TF40 1166 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 TLCD1Q96CP7 247 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CHMP6Q96FZ7 201 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CFAP57Q96MR6 1250 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SLC9A7Q96T83 725 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 NAP1L3Q99457 506 aaPredicted RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 RAD9AQ99638 391 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CXorf56Q9H5V9 222 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 AAASQ9NRG9 546 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CHST7Q9NS84 486 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 HAUS2Q9NVX0 235 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 LCHNA4D1U4 455 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 ADAM12O43184 909 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CAPN15O75808 1086 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 DRD4P21917 467 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 DNAJB2P25686 324 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 MAN1A1P33908 653 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 OR1D2P34982 312 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SCTRP47872 440 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 ZNF143P52747 638 aaPredicted RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 ATP11AP98196 1134 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SNCBQ16143 134 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 PPP2R5EQ16537 467 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 C15orf59Q2T9L4 293 aaPredicted RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 RAB41Q5JT25 222 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SH3PXD2AQ5TCZ1 1133 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SDHAF4Q5VUM1 108 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 AADACL2Q6P093 401 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 RNF19BQ6ZMZ0 732 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 SLC26A9Q7LBE3 791 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 FUBP3Q96I24 572 aaKnown RBP eCLIP12.95□□□□□ -0.34
CIITA-202ENST00000381835 ERP44Q9BS26 406 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 MTIF3Q9H2K0 278 aaKnown RBP12.95□□□□□ -0.34
CIITA-202ENST00000381835 SLC27A5Q9Y2P5 690 aa12.95□□□□□ -0.34
CIITA-202ENST00000381835 CTNNA2P26232 953 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SDC4P31431 198 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 PPM1AP35813 382 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 GLUD2P49448 558 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 GPR15P49685 360 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 PMS2P54278 862 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 RWDD2BP57060 319 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 GPR17Q13304 367 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 DDR2Q16832 855 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 LACTB2Q53H82 288 aaPredicted RBP12.94□□□□□ -0.34
CIITA-202ENST00000381835 EFHC1Q5JVL4 640 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ZFYVE27Q5T4F4 411 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ERMARDQ5T6L9 678 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 DUPD1Q68J44 220 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 RHOT1Q8IXI2 618 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 VPS52Q8N1B4 723 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 NIPA2Q8N8Q9 360 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 STKLD1Q8NE28 680 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 SCAMP5Q8TAC9 235 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 AUTS2Q8WXX7 1259 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 P3H4Q92791 437 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 XPO6Q96QU8 1125 aaKnown RBP12.94□□□□□ -0.34
CIITA-202ENST00000381835 TXLNGYQ9BZA5 131 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 CARD9Q9H257 536 aa12.94□□□□□ -0.34
CIITA-202ENST00000381835 ASNSD1Q9NWL6 643 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms