RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 KCNN1Q92952 543 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 ABCB10Q9NRK6 738 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 USTQ9Y2C2 406 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 TYW5A2RUC4 315 aaKnown RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 UBE2Q2LH0YL09 131 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 K7ENM7 598 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 CLIC2O15247 247 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 GGPS1O95749 300 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 GH1P01241 217 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PTPN2P17706 415 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 CDH2P19022 906 aaPredicted RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 HADHAP40939 763 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PTENP60484 403 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PRKCQQ04759 706 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 SFT2D3Q587I9 215 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 DCUN1D2Q6PH85 259 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 VPS33AQ96AX1 596 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 CSRNP1Q96S65 589 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 POU2F3Q9UKI9 436 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PCDHA6Q9UN73 950 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 GNEQ9Y223 722 aaKnown RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 MRPS7Q9Y2R9 242 aaKnown RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PCDHA8Q9Y5H6 950 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 WNT7AO00755 349 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 ETFBP38117 255 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PDK4Q16654 411 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 TYSND1Q2T9J0 566 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF362Q5T0B9 420 aaPredicted RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PQLC1Q8N2U9 271 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 FAM84BQ96KN1 310 aaPredicted RBP12.14□□□□□ -0.47
NPHP4-202ENST00000378161 TMEM109Q9BVC6 243 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 HMGXB4Q9UGU5 601 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PPM1HQ9ULR3 514 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 PMF1-BGLAPU3KQ54 211 aa12.14□□□□□ -0.47
NPHP4-202ENST00000378161 CNTNAP5Q8WYK1 1306 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 FOXP2O15409 715 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 FUCA1P04066 466 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 CDH1P12830 882 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 HOXD10P28358 340 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 TOP3AQ13472 1001 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 LLGL1Q15334 1064 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 UBE2SQ16763 222 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 AASDHQ4L235 1098 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 ARID3BQ8IVW6 561 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SCFD2Q8WU76 684 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 CPVLQ9H3G5 476 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 NR2E3Q9Y5X4 410 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 OR7A10O76100 309 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 POLR2CP19387 275 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SLC5A2P31639 672 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 NKX2-5P52952 324 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 GARNL3Q5VVW2 1013 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 KCNK18Q7Z418 384 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 PEX13Q92968 403 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SLC7A6OSQ96CW6 309 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 DCLK3Q9C098 648 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 MKRN2Q9H000 416 aaKnown RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 ACTL7BQ9Y614 415 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 LOC100653049A0A140TA62 436 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SAC3D1A6NKF1 404 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 TRAFD1O14545 582 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 VILLO15195 856 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 GPC4O75487 556 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 KRT34O76011 436 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 CCDC58Q4VC31 144 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SBK1Q52WX2 424 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SLC9A4Q6AI14 798 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 ARHGEF19Q8IW93 802 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 DEPDC4Q8N2C3 294 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 SH3RF3Q8TEJ3 882 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 PHF21AQ96BD5 680 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF224Q9NZL3 707 aa12.13□□□□□ -0.47
NPHP4-202ENST00000378161 MARCOQ9UEW3 520 aaPredicted RBP12.13□□□□□ -0.47
NPHP4-202ENST00000378161 C12orf71A8MTZ7 269 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 LRRN2O75325 713 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 TNFRSF21O75509 655 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 NPR1P16066 1061 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MFAP3P55082 362 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 COL9A3Q14050 684 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 DSC3Q14574 896 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 EPHA7Q15375 998 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 NAALADL2Q58DX5 795 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 ARSHQ5FYA8 562 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 KCTD1Q719H9 257 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SEPT12Q8IYM1 358 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 CHPT1Q8WUD6 406 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 C12orf43Q96C57 262 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 ZNF560Q96MR9 790 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 POLR3BQ9NW08 1133 aaPredicted RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 MAP3K20Q9NYL2 800 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 DNAJC16Q9Y2G8 782 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 GAKO14976 1311 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 C1orf167Q5SNV9 1468 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SH3D21A4FU49 640 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 RPL17P18621 184 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SOX11P35716 441 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 NFIAQ12857 509 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 SF3B3Q15393 1217 aaKnown RBP12.12□□□□□ -0.47
NPHP4-202ENST00000378161 AOC3Q16853 763 aa12.12□□□□□ -0.47
NPHP4-202ENST00000378161 DGUOKQ16854 277 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms