RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 ALDH9A1P49189 494 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 ZNF699Q32M78 642 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 ENKURQ8TC29 256 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SLC44A1Q8WWI5 657 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SAP30BPQ9UHR5 308 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 KRT6AP02538 564 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 KRT6BP04259 564 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 BMP6P22004 513 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 ZNF512Q96ME7 567 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SENP3Q9H4L4 574 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SPATA31D1Q6ZQQ2 1576 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SGF29Q96ES7 293 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TRIM39Q9HCM9 518 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TMED10P49755 219 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SPATA19Q7Z5L4 167 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 EDC3Q96F86 508 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CYP2S1Q96SQ9 504 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TMEM121Q9BTD3 319 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RIMKLBQ9ULI2 386 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 C2orf81A6NN90 581 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PAPSS2O95340 614 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CHRNA5P30532 468 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 NPTX2P47972 431 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TSPY1Q01534 308 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RUNX1T1Q06455 604 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 GALNT18Q6P9A2 607 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RTFDC1Q9BY42 306 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HTR3EA5X5Y0 456 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SH3BP5LQ7L8J4 393 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 GRPEL2Q8TAA5 225 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 UBQLN1Q9UMX0 589 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 MTMR7Q9Y216 660 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 C1orf167Q5SNV9 1468 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 BCL9LQ86UU0 1499 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CRTAMO95727 393 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 ST13P50502 369 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 YBEYP58557 167 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RAPH1Q70E73 1250 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PTPRN2Q92932 1015 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HIST1H2AGP0C0S8 130 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 FAM58BPP0C7Q3 252 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 NCF2P19878 526 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HIST1H2ADP20671 130 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CTCFP49711 727 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SAMD14Q8IZD0 417 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 NKAPQ8N5F7 415 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 ATL1Q8WXF7 558 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HIST1H2AHQ96KK5 128 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HIST1H2AJQ99878 128 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 H2AFJQ9BTM1 129 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PRDM8Q9NQV8 689 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 DNAJC16Q9Y2G8 782 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TULP3O75386 442 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PGAM1P18669 254 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CCNYQ8ND76 341 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CRKP46108 304 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RAB27AP51159 221 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 UBXN2AP68543 259 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 IL18R1Q13478 541 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 JADE1Q6IE81 842 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 NFRKBQ6P4R8 1299 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 CCDC85AQ96PX6 553 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PRMT1Q99873 361 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 HSPH1Q92598 858 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SPATA5L1Q9BVQ7 753 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 FTOQ9C0B1 505 aaKnown RBP eCLIP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 RFTN2Q52LD8 501 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SNX19Q92543 992 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 FAM32AQ9Y421 112 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 SUPT7LO94864 414 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 GHRHRQ02643 423 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 FOXM1Q08050 763 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 LMBRD2Q68DH5 695 aaPredicted RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PSMA8Q8TAA3 256 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TMEM176AQ96HP8 235 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 DDX3XO00571 662 aaKnown RBP eCLIP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TBC1D4O60343 1298 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 AKAP3O75969 853 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 PLEKHA8P1O95397 391 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 JAM2P57087 298 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 YWHAZP63104 245 aaKnown RBP5.09□□□□□ -1.59
PCDH9-201ENST00000377861 IQSEC1Q6DN90 963 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 TNFSF13BQ9Y275 285 aa5.09□□□□□ -1.59
PCDH9-201ENST00000377861 STX11O75558 287 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 CAP2P40123 477 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 TNK2Q07912 1038 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 DIS3LQ8TF46 1054 aaKnown RBP5.09□□□□□ -1.6
PCDH9-201ENST00000377861 TBC1D10AQ9BXI6 508 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 CDYLQ9Y232 598 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 MDM4O15151 490 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 GUCY1B2O75343 617 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 RALAP11233 206 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 ADHFE1Q8IWW8 467 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 HAVCR2Q8TDQ0 301 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 DCPSQ96C86 337 aaKnown RBP5.09□□□□□ -1.6
PCDH9-201ENST00000377861 DNALI1O14645 258 aaPredicted RBP5.09□□□□□ -1.6
PCDH9-201ENST00000377861 DAB1O75553 588 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 AKR1B1P15121 316 aa5.09□□□□□ -1.6
PCDH9-201ENST00000377861 GABRB2P47870 512 aa5.09□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms