RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SNX25Q9H3E2 840 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 CD248Q9HCU0 757 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 SCN4AP35499 1836 aa21.63■■□□□ 1.05
CCDC88B-203ENST00000359902 HGSO14964 777 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 TM9SF1O15321 606 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 C1QAP02745 245 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 MT-ND3P03897 115 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 KCNE1P15382 129 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 KCNJ2P63252 427 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 GBE1Q04446 702 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 PTK7Q13308 1070 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 UBXN11Q5T124 520 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 LIMS2Q7Z4I7 341 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 PRPF39Q86UA1 669 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 LENG1Q96BZ8 264 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 C12orf65Q9H3J6 166 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 CYLDQ9NQC7 956 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC17A7Q9P2U7 560 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 IQANK1A0A1B0GTG1 560 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 CHUKO15111 745 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 APRTP07741 180 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 NQO1P15559 274 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 SOX4Q06945 474 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 FAAP100Q0VG06 881 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 SPRYD7Q5W111 196 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC2A14Q8TDB8 520 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 GOLGA2P5Q9HBQ8 144 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 AP4E1Q9UPM8 1137 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 IKBKGQ9Y6K9 419 aa21.62■■□□□ 1.05
CCDC88B-203ENST00000359902 ECM2O94769 699 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 SEPT7Q16181 437 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 OLFML2BQ68BL8 750 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 SH2D5Q6ZV89 423 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 OTOAQ7RTW8 1153 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 CDKL3Q8IVW4 592 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 APPL2Q8NEU8 664 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 CFAP36Q96G28 342 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 SERAC1Q96JX3 654 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 ZNF560Q96MR9 790 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 KCTD15Q96SI1 283 aaPredicted RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 POPDC2Q9HBU9 364 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 GTF2IRD1Q9UHL9 959 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 USH1CQ9Y6N9 552 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 PDCD11Q14690 1871 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 PCNTO95613 3336 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 TREHO43280 583 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 INHBAP08476 426 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 PNPLA4P41247 253 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 ACADSBP45954 432 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC45A4Q5BKX6 768 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 SWT1Q5T5J6 900 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 TLK2Q86UE8 772 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 CCDC185Q8N715 623 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 HSFY1Q96LI6 401 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 PLAC1Q9HBJ0 212 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 TTLL3Q9Y4R7 772 aa21.61■■□□□ 1.05
CCDC88B-203ENST00000359902 DCAF8L1A6NGE4 600 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 IGF2BP3O00425 579 aaKnown RBP eCLIP21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 GCATO75600 419 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 ZFXP17010 805 aaPredicted RBP21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 NR2C2P49116 596 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 TAF6P49848 677 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 C4orf22Q6V702 233 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 ASRGL1Q7L266 308 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 MCUQ8NE86 351 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 KLHL29Q96CT2 875 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 CSPG4P5Q96PW8 444 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 VPS11Q9H270 941 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 ZC3H7BQ9UGR2 993 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 WDR91A4D1P6 747 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 HAS3O00219 553 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 METTL18O95568 372 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 PSEN2P49810 448 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC18A2Q05940 514 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 MYLK2Q9H1R3 596 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 ARHGEF3Q9NR81 526 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 FLRT1Q9NZU1 646 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 CHKBQ9Y259 395 aa21.6■■□□□ 1.05
CCDC88B-203ENST00000359902 XPOTO43592 962 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 ATP6V1G2O95670 118 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 CCNB1P14635 433 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 TKTP29401 623 aaKnown RBP21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 MORN1Q5T089 497 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 KCNT2Q6UVM3 1135 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 C10orf82Q8WW14 230 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 TSPAN18Q96SJ8 248 aa21.59■■□□□ 1.05
CCDC88B-203ENST00000359902 LPXNO60711 386 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 ZNF865P0CJ78 1059 aaPredicted RBP21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 ALADP13716 330 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 SKIV2L2P42285 1042 aaKnown RBP21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 NEK3P51956 506 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 STRADAQ7RTN6 431 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 SLC26A11Q86WA9 606 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 CCDC33Q8N5R6 958 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 ARRDC4Q8NCT1 418 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 MAGEC3Q8TD91 643 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 TRIM33Q9UPN9 1127 aa21.58■■□□□ 1.05
CCDC88B-203ENST00000359902 CXorf49A8MYA2 514 aaPredicted RBP21.58■■□□□ 1.04
CCDC88B-203ENST00000359902 TRDMT1O14717 391 aaKnown RBP21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms