RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 RNASEH1O60930 286 aaKnown RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 FAM136AQ96C01 138 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 TKTL2Q9H0I9 626 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 KDM4CQ9H3R0 1056 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ATP13A1Q9HD20 1204 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 UXTQ9UBK9 157 aaPredicted RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 IPPQ9Y573 584 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 F8VP50 259 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 XYLBO75191 536 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ENO1P06733 434 aaKnown RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 EEF1B2P24534 225 aaKnown RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 KCNMA1Q12791 1236 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 CCNJLQ8IV13 435 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 DCLK3Q9C098 648 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 IKZF4Q9H2S9 585 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ARL2BPQ9Y2Y0 163 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ADAMTSL3P82987 1691 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 SYNDIG1LA6NDD5 238 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 MEFVO15553 781 aaPredicted RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 TGFB1I1O43294 461 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ADCY6O43306 1168 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 GRK4P32298 578 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 TAF11Q15544 211 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 MEA1Q16626 185 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 FAM83EQ2M2I3 478 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 SGO1Q5FBB7 561 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 RGS9BPQ6ZS82 235 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 FAM84AQ96KN4 292 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 EPN3Q9H201 632 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 NXF3Q9H4D5 531 aaKnown RBP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 PCDHA3Q9Y5H8 950 aa15.37■□□□□ 0.05
COL17A1-201ENST00000353479 SF3B1O75533 1304 aaKnown RBP eCLIP15.37■□□□□ 0.05
COL17A1-201ENST00000353479 ONECUT3O60422 494 aaPredicted RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 ARL4DP49703 201 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 RFWD2Q8NHY2 731 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 PIP4K2CQ8TBX8 421 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 SERPINB12Q96P63 405 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 C2CD2Q9Y426 696 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 ANGPT2O15123 496 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 EPHB6O15197 1021 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 ARHGDIAP52565 204 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 CHI3L2Q15782 390 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 CNGA2Q16280 664 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 PLIN4Q96Q06 1357 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 SMIM35A0A1B0GVV1 85 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 YBX3P16989 372 aaKnown RBP eCLIP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 NPR3P17342 541 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 GRM5P41594 1212 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 RFX8Q6ZV50 586 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 LENG1Q96BZ8 264 aaPredicted RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 MAML3Q96JK9 1138 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 FAM105AQ9NUU6 356 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 COL1A2P08123 1366 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 AARSP49588 968 aaKnown RBP eCLIP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 LRRC8EQ6NSJ5 796 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 UGT3A1Q6NUS8 523 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 B3GALNT2Q8NCR0 500 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 SOWAHBA6NEL2 793 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 BMT2Q1RMZ1 405 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 AARS2Q5JTZ9 985 aaKnown RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 RETSATQ6NUM9 610 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 NT5DC3Q86UY8 548 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 E2F7Q96AV8 911 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 CCDC124Q96CT7 223 aaKnown RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 ADGRE3Q9BY15 652 aa15.36■□□□□ 0.05
COL17A1-201ENST00000353479 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.36■□□□□ 0.05
COL17A1-201ENST00000353479 SYNCRIPO60506 623 aaKnown RBP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 CRTAMO95727 393 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 C15orf59Q2T9L4 293 aaPredicted RBP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 TTLL9Q3SXZ7 439 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 LPCAT1Q8NF37 534 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 ABCC13Q9NSE7 274 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 DMGDHQ9UI17 866 aaKnown RBP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 VANGL2Q9ULK5 521 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 ILDR2Q71H61 639 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 YIPF2Q9BWQ6 316 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 CDC42EP4Q9H3Q1 356 aaKnown RBP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 NDE1Q9NXR1 346 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 CDH9Q9ULB4 789 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 NR2E3Q9Y5X4 410 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 PTPN7P35236 360 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 C6orf10Q5SRN2 563 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 C16orf59Q7L2K0 433 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 UPF1Q92900 1129 aaKnown RBP eCLIP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 FAM111AQ96PZ2 611 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 GANQ9H2C0 597 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 MANSC1Q9H8J5 431 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 MARCH2Q9P0N8 246 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 FAM208AQ9UK61 1670 aaKnown RBP15.35■□□□□ 0.05
COL17A1-201ENST00000353479 ZACNQ401N2 412 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 ANKS3Q6ZW76 656 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 HTR3CQ8WXA8 447 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 CCT8L2Q96SF2 557 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 FGFBP2Q9BYJ0 223 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 PCDH9Q9HC56 1237 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 PKD2L2Q9NZM6 624 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 GIT1Q9Y2X7 761 aa15.35■□□□□ 0.05
COL17A1-201ENST00000353479 TREHO43280 583 aa15.34■□□□□ 0.05
COL17A1-201ENST00000353479 RARGP13631 454 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms