RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 C15orf59Q2T9L4 293 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 PAN2Q504Q3 1202 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 BOLA3Q53S33 107 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 KAZNQ674X7 775 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 DRICH1Q6PGQ1 229 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 ANKS1BQ7Z6G8 1248 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 MAB21L3Q8N8X9 362 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 DBF4BQ8NFT6 615 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ART4Q93070 314 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 PCED1BQ96HM7 432 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 CFAP57Q96MR6 1250 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TRIM31Q9BZY9 425 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 EPB41L4BQ9H329 900 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 EBF2Q9HAK2 575 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 LRRC4Q9HBW1 653 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 KRT82Q9NSB4 513 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 WHRNQ9P202 907 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 PCDHB8Q9UN66 801 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 USP15Q9Y4E8 981 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 NLRC5Q86WI3 1866 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TLDC2A0PJX2 215 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 DCDC2CA8MYV0 355 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TMEM189-UBE2V1I3L0A0 370 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 PQBP1O60828 265 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 AP1G2O75843 785 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 DDHD2O94830 711 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FBXO21O94952 628 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 SKIV2L2P42285 1042 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 MAP3K7CLP57077 242 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ATP11AP98196 1134 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 GPNMBQ14956 572 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 MAPRE1Q15691 268 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 CDO1Q16878 200 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 SMTNL2Q2TAL5 461 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 KCNT1Q5JUK3 1230 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 SH3PXD2AQ5TCZ1 1133 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 OVOS1Q6IE37 1185 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FAM171BQ6P995 826 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ZDHHC24Q6UX98 284 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ANKRD33Q7Z3H0 272 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FAM35AQ86V20 835 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ZNF280BQ86YH2 543 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 COLGALT2Q8IYK4 626 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ABI1Q8IZP0 508 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 SIX6OS1Q8N1H7 587 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TTC13Q8NBP0 860 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FBXO25Q8TCJ0 367 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 HASPINQ8TF76 798 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 CLEC4CQ8WTT0 213 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FAM172AQ8WUF8 416 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TEKT4Q8WW24 435 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ATG4AQ8WYN0 398 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 ACSF2Q96CM8 615 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 SMARCD1Q96GM5 515 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 TBCBQ99426 244 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 RTP3Q9BQQ7 232 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 DDX23Q9BUQ8 820 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 FRMD8P1Q9BZ68 369 aaPredicted RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 NGRNQ9NPE2 291 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 TBC1D13Q9NVG8 400 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLK3-201ENST00000345005 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLK3-201ENST00000345005 GRHL1Q9NZI5 618 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 R3HDM2Q9Y2K5 976 aaKnown RBP13.34□□□□□ -0.27
CLK3-201ENST00000345005 SNX24Q9Y343 169 aa13.34□□□□□ -0.27
CLK3-201ENST00000345005 RIPK2O43353 540 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 SNX3O60493 162 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 TCEA3O75764 348 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 ATP5HO75947 161 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 BEST1O76090 585 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 ITIH2P19823 946 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 MRPS5P82675 430 aaKnown RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 TSPY1Q01534 308 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 ADIGQ0VDE8 80 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 CCDC142Q17RM4 750 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 INTS6LQ5JSJ4 861 aaKnown RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 TLDC1Q6P9B6 456 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 SLC39A5Q6ZMH5 540 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 MAP7D3Q8IWC1 876 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 LRRC34Q8IZ02 419 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 BBOF1Q8ND07 529 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 MDM1Q8TC05 714 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 DYDC1Q8WWB3 177 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 HSPH1Q92598 858 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 CENPIQ92674 756 aaPredicted RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 ELAC2Q9BQ52 826 aaKnown RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 NOP53Q9NZM5 478 aaKnown RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 BAIAP2L1Q9UHR4 511 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 LRFN2Q9ULH4 789 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 DRG1Q9Y295 367 aaKnown RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 MICAL3Q7RTP6 2002 aa13.33□□□□□ -0.28
CLK3-201ENST00000345005 FNDC1Q4ZHG4 1894 aaPredicted RBP13.33□□□□□ -0.28
CLK3-201ENST00000345005 PATJQ8NI35 1801 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 HOXA2O43364 376 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 LIASO43766 372 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 ENDOD1O94919 500 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 ALADP13716 330 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 MATKP42679 507 aa13.32□□□□□ -0.28
CLK3-201ENST00000345005 RPL21P46778 160 aaKnown RBP13.32□□□□□ -0.28
CLK3-201ENST00000345005 CLNS1AP54105 237 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms