RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CYP2C18P33260 490 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC1A6P48664 564 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 POLD2P49005 469 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CPT1AP50416 773 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SPP2Q13103 211 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 PLA2G4FQ68DD2 849 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TXNRD3Q86VQ6 643 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SH3GL2Q99962 352 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 KLHL11Q9NVR0 708 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 BARX2Q9UMQ3 279 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SNAP91O60641 907 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TXNP10599 105 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 FAM98BQ52LJ0 330 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TMCO4Q5TGY1 634 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SLC47A2Q86VL8 602 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 UGT2B28Q9BY64 529 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 LRMDAQ9H2I8 198 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TMEM245Q9H330 911 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 LHX1P48742 406 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 BST2Q10589 180 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ACVR2BQ13705 512 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 PRR5LQ6MZQ0 368 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 AAGABQ6PD74 315 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 C15orf52Q6ZUT6 534 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CDC26Q8NHZ8 85 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ACTL9Q8TC94 416 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ASB7Q9H672 318 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 COL5A2P05997 1499 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NPTXRO95502 500 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 RPL21P46778 160 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 CASP7P55210 303 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SNAP25P60880 206 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 WASHC5Q12768 1159 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NCF4Q15080 339 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ZBTB41Q5SVQ8 909 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 NUP93Q8N1F7 819 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 ZKSCAN4Q969J2 545 aaPredicted RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 OLFM1Q99784 485 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 DUSP9Q99956 384 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 SEMA4AQ9H3S1 761 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 DPP3Q9NY33 737 aa10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 TRMT6Q9UJA5 497 aaKnown RBP10.59□□□□□ -0.71
CCDC88A-202ENST00000336838 UBR2Q8IWV8 1755 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SNX3O60493 162 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 PDCD6IPQ8WUM4 868 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SPATA16Q9BXB7 569 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 NEMP1O14524 444 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 AREL1O15033 823 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 CBFA2T3O75081 653 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 TGDSO95455 350 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 CYBBP04839 570 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ANXA6P08133 673 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 DAB2P98082 770 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ZBTB49Q6ZSB9 765 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM71AQ8IYT1 594 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM143Q96AN5 459 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM109Q9BVC6 243 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 STK39Q9UEW8 545 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 BCL9O00512 1426 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 MRC1P22897 1456 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 VWA5AO00534 786 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 CITO14578 2027 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 NKRFO15226 690 aaKnown RBP eCLIP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SERPINB5P36952 375 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 RAB14P61106 215 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 MPP3Q13368 585 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SMTNL2Q2TAL5 461 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 GALNT4Q8N4A0 578 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 IL22Q9GZX6 179 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 C2CD2LO14523 706 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ATP9AO75110 1047 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 NPM3O75607 178 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 RRM1P23921 792 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 HYIQ5T013 277 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 MYLK2Q9H1R3 596 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 DMAP1Q9NPF5 467 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 RIC1Q4ADV7 1423 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 UBDO15205 165 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SERPINA6P08185 405 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ME2P23368 584 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 GTF2H3Q13889 308 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 CAMK1DQ8IU85 385 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ATP6V0D2Q8N8Y2 350 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 OR6Y1Q8NGX8 325 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 VPS50Q96JG6 964 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SLC30A1Q9Y6M5 507 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 BCL9LQ86UU0 1499 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 H7C0S8 307 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 TULP2O00295 520 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 YY1P25490 414 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SFSWAPQ12872 951 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 TOP3AQ13472 1001 aaPredicted RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF786Q8N393 782 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 GIMAP4Q9NUV9 329 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 BCL10O95999 233 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SUPT20HL2P0C7V6 817 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 CACNB3P54284 484 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 LRRC36Q1X8D7 754 aa10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 ZC3H12BQ5HYM0 836 aaKnown RBP10.58□□□□□ -0.72
CCDC88A-202ENST00000336838 SPDYAQ5MJ70 313 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms