RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 MTMR12Q9C0I1 747 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 HAPLN2Q9GZV7 340 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 XAB2Q9HCS7 855 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 TMX2Q9Y320 296 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 NR2E3Q9Y5X4 410 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ADCY3O60266 1144 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 KRT19P08727 400 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 FAM200BP0CF97 657 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CSH1P0DML2 217 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CSH2P0DML3 217 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 TNFSF9P41273 254 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CDH6P55285 790 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CRADDP78560 199 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 TFAMQ00059 246 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 PIGHQ14442 188 aaPredicted RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 HADHQ16836 314 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 CCDC142Q17RM4 750 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 DENND1BQ6P3S1 775 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 PDSS2Q86YH6 399 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 GALNT4Q8N4A0 578 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 FAM172AQ8WUF8 416 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ATXN7L3BQ96GX2 97 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CCDC106Q9BWC9 280 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 IDI2Q9BXS1 227 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 SMYD2Q9NRG4 433 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 PNPOQ9NVS9 261 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 DDX43Q9NXZ2 648 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 DDX56Q9NY93 547 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 IL1RAPL1Q9NZN1 696 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 BOLA1Q9Y3E2 137 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 STIP1P31948 543 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 ACAD11Q709F0 780 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ARFGAP1Q8N6T3 406 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 NETO2Q8NC67 525 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ICA1LQ8NDH6 482 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 VCPIP1Q96JH7 1222 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CISHQ9NSE2 258 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 CNTN3Q9P232 1028 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 ATXN10Q9UBB4 475 aa8.17□□□□□ -1.1
VMA21-201ENST00000330374 APOBEC2Q9Y235 224 aaKnown RBP8.17□□□□□ -1.1
VMA21-201ENST00000330374 NRAPQ86VF7 1730 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 K7ERI5 159 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 CFLARO15519 480 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 ZC3H11AO75152 810 aaKnown RBP eCLIP8.16□□□□□ -1.1
VMA21-201ENST00000330374 DGKIO75912 1065 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 UQCRBP14927 111 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 FOLH1Q04609 750 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 SLC18A2Q05940 514 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 LSAMPQ13449 338 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 GK3PQ14409 553 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 FASTKD1Q53R41 847 aaKnown RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 FBXL19Q6PCT2 694 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 SYTL5Q8TDW5 730 aaPredicted RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 AZIN2Q96A70 460 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 ZNF341Q9BYN7 854 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 ST6GALNAC4Q9H4F1 302 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 TBC1D22BQ9NU19 505 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.16□□□□□ -1.1
VMA21-201ENST00000330374 TMOD2Q9NZR1 351 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 COMMD3-BMI1R4GMX3 469 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 C15orf38-AP3S2A0A0A6YYH1 394 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 NELFEP18615 380 aaKnown RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 HOXA10P31260 410 aaPredicted RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 COPAP53621 1224 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 COG7P83436 770 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 CCNIQ14094 377 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 ACAP1Q15027 740 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 R3HDM1Q15032 1099 aaKnown RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 PTPN20Q4JDL3 420 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 ARPINQ7Z6K5 226 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 TRIM74Q86UV6 250 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 TRIM73Q86UV7 250 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 WDTC1Q8N5D0 677 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 DEPTORQ8TB45 409 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 DEPDC1BQ8WUY9 529 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 XPNPEP1Q9NQW7 623 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 MAGED2Q9UNF1 606 aaPredicted RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 E9PBE3 544 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 DCXO43602 365 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 KLHL41O60662 606 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 PMLP29590 882 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 MIPP30301 263 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 CDH8P55286 799 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 SNRPFP62306 86 aaKnown RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 PSMD6Q15008 389 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 C15orf39Q6ZRI6 1047 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 MPP5Q8N3R9 675 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 PGBD4Q96DM1 585 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 MOCOSQ96EN8 888 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 TMEM39BQ9GZU3 492 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 HMX1Q9NP08 348 aaPredicted RBP8.16□□□□□ -1.1
VMA21-201ENST00000330374 STK32BQ9NY57 414 aa8.16□□□□□ -1.1
VMA21-201ENST00000330374 C3orf70A6NLC5 250 aaPredicted RBP8.15□□□□□ -1.1
VMA21-201ENST00000330374 TTLL13PA6NNM8 815 aa8.15□□□□□ -1.1
VMA21-201ENST00000330374 PITPNM1O00562 1244 aa8.15□□□□□ -1.1
VMA21-201ENST00000330374 GPR37O15354 613 aa8.15□□□□□ -1.1
VMA21-201ENST00000330374 FKBP6O75344 327 aa8.15□□□□□ -1.1
VMA21-201ENST00000330374 ITGBL1O95965 494 aaPredicted RBP8.15□□□□□ -1.1
VMA21-201ENST00000330374 GARTP22102 1010 aa8.15□□□□□ -1.1
VMA21-201ENST00000330374 GRIA1P42261 906 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms