RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FAM204AQ9H8W3 233 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RXFP1Q9HBX9 757 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 GMIPQ9P107 970 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 USP18Q9UMW8 372 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 YIPF1Q9Y548 306 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RANBP2P49792 3224 aaKnown RBP10.46□□□□□ -0.73
HMGB3-201ENST00000325307 NLRC5Q86WI3 1866 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 A0A1W2PQH9 124 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 SLC38A8A6NNN8 435 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 HIDE1A8MVS5 230 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 PTPN9P43378 593 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 UBE3AQ05086 875 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 CKAP4Q07065 602 aaKnown RBP10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RAB30Q15771 203 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 SLC25A52Q3SY17 297 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 ATP13A4Q4VNC1 1196 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 RNF139Q8WU17 664 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 HNRNPLLQ8WVV9 542 aaKnown RBP10.46□□□□□ -0.73
HMGB3-201ENST00000325307 ARNTL2Q8WYA1 636 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 HSPH1Q92598 858 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 SAMD11Q96NU1 681 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 SLC28A3Q9HAS3 691 aa10.46□□□□□ -0.73
HMGB3-201ENST00000325307 ARGLU1Q9NWB6 273 aaPredicted RBP10.46□□□□□ -0.73
HMGB3-201ENST00000325307 TGM5O43548 720 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 LILRB3O75022 631 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 KRT7P08729 469 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 PEX5P50542 639 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 TWF1Q12792 350 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 TAF10Q12962 218 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 MTA1Q13330 715 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 DCAF12L1Q5VU92 463 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 ARCQ7LC44 396 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 ADAT2Q7Z6V5 191 aaKnown RBP10.46□□□□□ -0.74
HMGB3-201ENST00000325307 MON1AQ86VX9 555 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 ARFGAP1Q8N6T3 406 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 ZNF513Q8N8E2 541 aaPredicted RBP10.46□□□□□ -0.74
HMGB3-201ENST00000325307 MRPL43Q8N983 215 aaKnown RBP10.46□□□□□ -0.74
HMGB3-201ENST00000325307 KLHL5Q96PQ7 755 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 SLITRK1Q96PX8 696 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 SLC2A13Q96QE2 648 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 CARD9Q9H257 536 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 NUDT5Q9UKK9 219 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 SCML2Q9UQR0 700 aa10.46□□□□□ -0.74
HMGB3-201ENST00000325307 LRRD1A4D1F6 860 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 C2orf71A6NGG8 1288 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 C5orf67F2Z3F1 127 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PI4K2BG5E9Z4 385 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PYGMP11217 842 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 CETN2P41208 172 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PITX1P78337 314 aaPredicted RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 DEUP1Q05D60 604 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 LONRF2Q1L5Z9 754 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 TXNRD3NBQ6F5E7 133 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 AADACL2Q6P093 401 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 WDR93Q6P2C0 686 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ARHGAP18Q8N392 663 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 RNF34Q969K3 372 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 RNF25Q96BH1 459 aaPredicted RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ZNF512Q96ME7 567 aaPredicted RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ABCC13Q9NSE7 274 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 DDIT4Q9NX09 232 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PTPRDP23468 1912 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 MAP2K7O14733 419 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 GLUD1P00367 558 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PCK1P35558 622 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 IRS1P35568 1242 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ATXN1P54253 815 aaKnown RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 EPHB3P54753 998 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ERVK-21P61565 698 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 BHLHA9Q7RTU4 235 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 SCML4Q8N228 414 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PSD3Q9NYI0 1048 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 INSL5Q9Y5Q6 135 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 MYO7AQ13402 2215 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 PGRMC1O00264 195 aaKnown RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 FGGP02679 453 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 FYNP06241 537 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 CSH1P0DML2 217 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 CSH2P0DML3 217 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 MYBL2P10244 700 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 IL1R2P27930 398 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 HDAC4P56524 1084 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 SLC25A11Q02978 314 aaKnown RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 BRD3Q15059 726 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 LRRC38Q5VT99 294 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 FAM131BQ86XD5 332 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 TCEAL8Q8IYN2 117 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 KCTD6Q8NC69 237 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 ITFG2Q969R8 447 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 NMUR1Q9HB89 426 aa10.45□□□□□ -0.74
HMGB3-201ENST00000325307 TLR8Q9NR97 1041 aaKnown RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 DDX56Q9NY93 547 aaKnown RBP10.45□□□□□ -0.74
HMGB3-201ENST00000325307 TRUB2O95900 331 aaKnown RBP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 LRG1P02750 347 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 PGFP49763 221 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 PLD1Q13393 1074 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 SND1Q7KZF4 910 aaKnown RBP eCLIP10.44□□□□□ -0.74
HMGB3-201ENST00000325307 SCD5Q86SK9 330 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 KATNAL2Q8IYT4 538 aa10.44□□□□□ -0.74
HMGB3-201ENST00000325307 KREMEN2Q8NCW0 462 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms