RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RIPOR1Q6ZS17 1223 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 MIEF1Q9NQG6 463 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 MAN1C1Q9NR34 630 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 THAP1Q9NVV9 213 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 EHD3Q9NZN3 535 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 PALLDQ8WX93 1383 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 H7C1W4 665 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF438Q7Z4V0 828 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 TAF8Q7Z7C8 310 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CHKBQ9Y259 395 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 SH3GLB1Q9Y371 365 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 SH3BP1Q9Y3L3 701 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 MYMKA6NI61 221 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CPSF4O95639 269 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 TOP3AQ13472 1001 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 DDX39BQ13838 428 aaKnown RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 DHRSXQ8N5I4 330 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 B3GALNT2Q8NCR0 500 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 BLOC1S5Q8TDH9 187 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CROTQ9UKG9 612 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 A0A1W2PRG6 482 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 GLRBP48167 497 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 AKIRIN2Q53H80 203 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 OXNAD1Q96HP4 312 aaPredicted RBP14.26□□□□□ -0.13
CSPG4-201ENST00000308508 THAP2Q9H0W7 228 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CAPN10Q9HC96 672 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 SLAIN2Q9P270 581 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 ING4Q9UNL4 249 aa14.26□□□□□ -0.13
CSPG4-201ENST00000308508 CCDC154A6NI56 674 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 PIK3CDO00329 1044 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 STK4Q13043 487 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 OR7A2PQ8NGA2 310 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 S100ZQ8WXG8 99 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 RRN3Q9NYV6 651 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 L1RE1Q9UN81 338 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 PTGES3LE9PB15 166 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 VPS4BO75351 444 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 HMBSP08397 361 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 CNOT7Q9UIV1 285 aaKnown RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 ASB14A6NK59 587 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 YY1P25490 414 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 PRKAA1Q13131 559 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 GPRASP2Q96D09 838 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 POLRMTO00411 1230 aaKnown RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 CBFA2T3O75081 653 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 GRIK3Q13003 919 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 SAMD4BQ5PRF9 694 aaKnown RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 LIN54Q6MZP7 749 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 C11orf63Q6NUN7 778 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 ULK2Q8IYT8 1036 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 SRBD1Q8N5C6 995 aaKnown RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 GRIP2Q9C0E4 1043 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 WDCPQ9H6R7 721 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 NAGPAQ9UK23 515 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 NDUFAF1Q9Y375 327 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 RPS6KA5O75582 802 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 GRK4P32298 578 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 CHN2P52757 468 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 MYBPC2Q14324 1141 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 POLD3Q15054 466 aaPredicted RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 PAPD7Q5XG87 772 aaKnown RBP14.25□□□□□ -0.13
CSPG4-201ENST00000308508 TRIM48Q8IWZ4 208 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 PIF1Q9H611 641 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 CYP4F12Q9HCS2 524 aa14.25□□□□□ -0.13
CSPG4-201ENST00000308508 ATP4AP20648 1035 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 TGM3Q08188 693 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SPIRE1Q08AE8 756 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 Q4G0T1 1027 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SLC44A5Q8NCS7 719 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SYNDIG1Q9H7V2 258 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SLC25A13Q9UJS0 675 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 ACOT9Q9Y305 439 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 DYRK1BQ9Y463 629 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 ME2P23368 584 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 NKX1-1Q15270 411 aaPredicted RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 WRNIP1Q96S55 665 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 CLPBQ9H078 707 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 RMI1Q9H9A7 625 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 PLAGL2Q9UPG8 496 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 PNPLA7Q6ZV29 1317 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 BCLAF3A2AJT9 711 aaKnown RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SKIV2L2P42285 1042 aaKnown RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 STARP49675 285 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 NR1D2Q14995 579 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 ZNF614Q8N883 585 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 PRCCQ92733 491 aaPredicted RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 RSL24D1Q9UHA3 163 aaKnown RBP14.24□□□□□ -0.13
CSPG4-201ENST00000308508 UBE2QL1A1L167 161 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 H3BN98 237 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 SSNA1O43805 119 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 BMP10O95393 424 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 S100A6P06703 90 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 NPR3P17342 541 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 PRDX5P30044 214 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 BNC1Q01954 994 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 NECAB2Q7Z6G3 386 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 AMER2Q8N7J2 671 aa14.24□□□□□ -0.13
CSPG4-201ENST00000308508 ELOVL6Q9H5J4 265 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms