RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 IL1RAPL1Q9NZN1 696 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 DEC1Q9P2X7 70 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 IP6K2Q9UHH9 426 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 COG5Q9UP83 839 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 DLG5Q8TDM6 1919 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 COL1A2P08123 1366 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 CCDC188H7C350 402 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 NBNO60934 754 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 ANP32DO95626 131 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 PGM1P36871 562 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 VHLP40337 213 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 ARRB1P49407 418 aaPredicted RBP8.08□□□□□ -1.12
USP3-201ENST00000268049 VSNL1P62760 191 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 CNTN2Q02246 1040 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 STX3Q13277 289 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 KYNUQ16719 465 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 SPOPLQ6IQ16 392 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 SPATA21Q7Z572 469 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 EID3Q8N140 333 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 FAM133AQ8N9E0 248 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 HLA-CQ95604 372 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 CXorf40BQ96DE9 158 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 FAR2Q96K12 515 aa8.08□□□□□ -1.12
USP3-201ENST00000268049 CDCA3Q99618 268 aaPredicted RBP8.08□□□□□ -1.12
USP3-201ENST00000268049 DHX35Q9H5Z1 703 aaKnown RBP8.08□□□□□ -1.12
USP3-201ENST00000268049 CDV3Q9UKY7 258 aaKnown RBP8.08□□□□□ -1.12
USP3-201ENST00000268049 APOBEC2Q9Y235 224 aaKnown RBP8.08□□□□□ -1.12
USP3-201ENST00000268049 SCN11AQ9UI33 1791 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ANO9A1A5B4 782 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 HEATR9A2RTY3 570 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 EEF2KO00418 725 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 TJP3O95049 919 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ACSL3O95573 720 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ANXA5P08758 320 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ACRP10323 421 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 HNF1BP35680 557 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 EIF2B2P49770 351 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 MRPS25P82663 173 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 ZCWPW2Q504Y3 356 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 PTRHD1Q6GMV3 140 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 TRIM67Q6ZTA4 783 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 SLC24A5Q71RS6 500 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 CDR2LQ86X02 465 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 FBXL13Q8NEE6 735 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ST13P5Q8NFI4 369 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 SEC16BQ96JE7 1060 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ZFP42Q96MM3 310 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 RANBP17Q9H2T7 1088 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 RAD21L1Q9H4I0 556 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 PVALEFA0A1B0GWK0 134 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 C3orf70A6NLC5 250 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 PODXLO00592 558 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 RRP8O43159 456 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 SGPL1O95470 568 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 NR3C1P04150 777 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 RPL9P32969 192 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 CASRP41180 1078 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 MAPK8P45983 427 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ARFIP2P53365 341 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ATP2C1P98194 919 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 SEMA3FQ13275 785 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 DUSP28Q4G0W2 176 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 TIGD7Q6NT04 549 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 SLC30A10Q6XR72 485 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 IFNLR1Q8IU57 520 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 IRF7Q92985 503 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 MIEF2Q96C03 454 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 CNOT6LQ96LI5 555 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 TTPALQ9BTX7 342 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 FAM96AQ9H5X1 160 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 DNAJC17Q9NVM6 304 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 BFARQ9NZS9 450 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 NDUFS3O75489 264 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 WDR47O94967 919 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 HPGDP15428 266 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 S100A5P33763 92 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 SREBF1P36956 1147 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 GJA8P48165 433 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 EFEMP1Q12805 493 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 CELF3Q5SZQ8 465 aaKnown RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 HECTD3Q5T447 861 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ZNF658Q5TYW1 1059 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 DCLRE1AQ6PJP8 1040 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 EPM2AIP1Q7L775 607 aaPredicted RBP8.07□□□□□ -1.12
USP3-201ENST00000268049 GPR135Q8IZ08 494 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 GIPC2Q8TF65 315 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ZFYVE19Q96K21 471 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ITGA11Q9UKX5 1188 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 MPOP05164 745 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 ANXA6P08133 673 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 NCAM1P13591 858 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 BTKQ06187 659 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 MESDQ14696 234 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 PGM5Q15124 567 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 RFX8Q6ZV50 586 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 NIPA1Q7RTP0 329 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 PACS2Q86VP3 889 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 DAGLBQ8NCG7 672 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 HELQQ8TDG4 1101 aa8.07□□□□□ -1.12
USP3-201ENST00000268049 BSNDQ8WZ55 320 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms