RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 NQO1P15559 274 aaKnown RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 KLRC2P26717 231 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 HSPA13P48723 471 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 GCNT1Q02742 428 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 STX12Q86Y82 276 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 FUT8Q9BYC5 575 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.16□□□□□ -0.3
USP40-201ENST00000251722 LNPEPQ9UIQ6 1025 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 SUPT3HB4E1H0 165 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 RPN2P04844 631 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 ATP1A1P05023 1023 aaKnown RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 UBTFL6P0CB48 400 aaPredicted RBP13.16□□□□□ -0.3
USP40-201ENST00000251722 SKP1P63208 163 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 POTEAQ6S8J7 498 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 RGS9BPQ6ZS82 235 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 BRSK2Q8IWQ3 736 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 MAGEC3Q8TD91 643 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 SYNDIG1Q9H7V2 258 aa13.16□□□□□ -0.3
USP40-201ENST00000251722 ARPC4-TTLL3A0A0A6YYG9 625 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 RBM47A0AV96 593 aaKnown RBP13.15□□□□□ -0.3
USP40-201ENST00000251722 VTNP04004 478 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 FMR1Q06787 632 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP40-201ENST00000251722 ITIH4Q14624 930 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 RNF135Q8IUD6 432 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ZSWIM1Q9BR11 485 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 PRKD2Q9BZL6 878 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.15□□□□□ -0.3
USP40-201ENST00000251722 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.15□□□□□ -0.3
USP40-201ENST00000251722 PXDNQ92626 1479 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 GOLGA8RI6L899 631 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 SLC13A1Q9BZW2 595 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ING2Q9H160 280 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 LRRC40Q9H9A6 602 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 KLK14Q9P0G3 267 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 CDV3Q9UKY7 258 aaKnown RBP13.15□□□□□ -0.3
USP40-201ENST00000251722 SLC12A8A0AV02 714 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 BMP10O95393 424 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 PTPN3P26045 913 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 PON1P27169 355 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 MAPK8P45983 427 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 RHOAP61586 193 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 DSG1Q02413 1049 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 EXD1Q8NHP7 514 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ZNF558Q96NG5 402 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 RNF208Q9H0X6 261 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 TASP1Q9H6P5 420 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 RUBCNLQ9H714 662 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 PLAGL2Q9UPG8 496 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 CDYLQ9Y232 598 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ASNA1O43681 348 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ERBB2P04626 1255 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 PRLRP16471 622 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 TM4SF1P30408 202 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 TFDP3Q5H9I0 405 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 CELF3Q5SZQ8 465 aaKnown RBP13.15□□□□□ -0.3
USP40-201ENST00000251722 TAGAPQ8N103 731 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 MCRS1Q96EZ8 462 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 AGAP3Q96P47 875 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 KCNF1Q9H3M0 494 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 TRHDEQ9UKU6 1024 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 ZDHHC9Q9Y397 364 aa13.15□□□□□ -0.3
USP40-201ENST00000251722 MAP3K13O43283 966 aa13.15□□□□□ -0.31
USP40-201ENST00000251722 VGLL4Q14135 290 aa13.15□□□□□ -0.31
USP40-201ENST00000251722 CES5AQ6NT32 575 aa13.15□□□□□ -0.31
USP40-201ENST00000251722 MRPL1Q9BYD6 325 aaKnown RBP13.15□□□□□ -0.31
USP40-201ENST00000251722 NLNQ9BYT8 704 aa13.15□□□□□ -0.31
USP40-201ENST00000251722 SETD4Q9NVD3 440 aa13.15□□□□□ -0.31
USP40-201ENST00000251722 USP15Q9Y4E8 981 aaPredicted RBP13.15□□□□□ -0.31
USP40-201ENST00000251722 ADM5C9JUS6 153 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 C2CD2LO14523 706 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 YWHAQP27348 245 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 VSNL1P62760 191 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 JAMLQ86YT9 394 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 MYO1HQ8N1T3 1032 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 MMGT1Q8N4V1 131 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 VAT1Q99536 393 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 INTS13Q9NVM9 706 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 AMACRQ9UHK6 382 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 VPS28Q9UK41 221 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 SLC39A10Q9ULF5 831 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 HACD1B0YJ81 288 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 FESP07332 822 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 C4BPBP20851 252 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 NR2C2P49116 596 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 TMEM119Q4V9L6 283 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 ACOT1Q86TX2 421 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 CARNMT1Q8N4J0 409 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 DNAJC7Q99615 494 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 CCDC134Q9H6E4 229 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 DDX43Q9NXZ2 648 aaKnown RBP13.14□□□□□ -0.31
USP40-201ENST00000251722 AKAP7Q9P0M2 348 aaPredicted RBP13.14□□□□□ -0.31
USP40-201ENST00000251722 DYRK1BQ9Y463 629 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 RAD54BQ9Y620 910 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 UNCXA6NJT0 531 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 FAM47E-STBD1D6RA91 191 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 ARIH2O95376 493 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 CYP11B1P15538 503 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 CHRM3P20309 590 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 GSTT1P30711 240 aa13.14□□□□□ -0.31
USP40-201ENST00000251722 COILP38432 576 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms