RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 EHD3Q9NZN3 535 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 SHOX2O60902 331 aaPredicted RBP10.75□□□□□ -0.69
VCL-201ENST00000211998 ZBTB7AO95365 584 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 LDLRP01130 860 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 LYNP07948 512 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 PDGFRAP16234 1089 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 IL12AP29459 219 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 RPA3P35244 121 aaPredicted RBP10.75□□□□□ -0.69
VCL-201ENST00000211998 TALDO1P37837 337 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 PKNOX1P55347 436 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 ABATP80404 500 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 ZNF235Q14590 738 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 NEK10Q6ZWH5 1172 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 EXOC3L1Q86VI1 746 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 RNF149Q8NC42 400 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 KLHL32Q96NJ5 620 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 OLFM1Q99784 485 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 MTG1Q9BT17 334 aaPredicted RBP10.75□□□□□ -0.69
VCL-201ENST00000211998 SMARCAD1Q9H4L7 1026 aa10.75□□□□□ -0.69
VCL-201ENST00000211998 GUCY1B2O75343 617 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 CSE1LP55060 971 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 SNRPFP62306 86 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 FEZF2Q8TBJ5 459 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 ASAP3Q8TDY4 903 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TRPC4APQ8TEL6 797 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DLG3Q92796 817 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 PIF1Q9H611 641 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 HPS4Q9NQG7 708 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 THAP1Q9NVV9 213 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 KCNK4Q9NYG8 393 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TPRKBQ9Y3C4 175 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TRIM17Q9Y577 477 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 QRICH2Q9H0J4 1663 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SETBP1Q9Y6X0 1596 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SLCO1B7G3V0H7 640 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TNPO2O14787 897 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 MAGEB2O15479 319 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DCXO43602 365 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 KLHL18O94889 574 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 RAB27AP51159 221 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 RBP5P82980 135 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DGCR6Q14129 220 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DENND1BQ6P3S1 775 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SNX32Q86XE0 403 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 FAM13CQ8NE31 585 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 APOPT1Q96IL0 206 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SMAD5Q99717 465 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 AP4B1Q9Y6B7 739 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DFFAO00273 331 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DNM1LO00429 736 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 INPP4BO15327 924 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 MGRN1O60291 552 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 ATP5BP06576 529 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 ALADP13716 330 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 AVPR1AP37288 418 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TUBA4AP68366 448 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 MTMR2Q13614 643 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 AUHQ13825 339 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 NCF4Q15080 339 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TTC7BQ86TV6 843 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 ARHGEF3Q9NR81 526 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 MRPL39Q9NYK5 338 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 RUVBL2Q9Y230 463 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 PRG3Q9Y2Y8 225 aaPredicted RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 C15orf38-AP3S2A0A0A6YYH1 394 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SPDYE5A6NIY4 337 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 PTPN7P35236 360 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 ACAD10Q6JQN1 1059 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 ARPINQ7Z6K5 226 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 PLEKHA5Q9HAU0 1116 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 SYTL2Q9HCH5 934 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 CROTQ9UKG9 612 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 DDX3XO00571 662 aaKnown RBP eCLIP10.74□□□□□ -0.693e-26■□□□□ 8.4
VCL-201ENST00000211998 PUDPQ08623 228 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 NKX1-1Q15270 411 aaPredicted RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 DGKDQ16760 1214 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 STK32CQ86UX6 486 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 PPP1R2P1Q96PQ5 205 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TJP2Q9UDY2 1190 aa10.74□□□□□ -0.69
VCL-201ENST00000211998 TDRKHQ9Y2W6 561 aaKnown RBP10.74□□□□□ -0.69
VCL-201ENST00000211998 SUPT7LO94864 414 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 MOCS2O96007 188 aaPredicted RBP10.73□□□□□ -0.69
VCL-201ENST00000211998 LSM3P62310 102 aaKnown RBP10.73□□□□□ -0.69
VCL-201ENST00000211998 DGKKQ5KSL6 1271 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 EFL1Q7Z2Z2 1120 aaKnown RBP10.73□□□□□ -0.69
VCL-201ENST00000211998 SPATA2LQ8IUW3 424 aaPredicted RBP10.73□□□□□ -0.69
VCL-201ENST00000211998 LRRC49Q8IUZ0 686 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 ZNF34Q8IZ26 560 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 RAB42Q8N4Z0 105 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 ATG16L2Q8NAA4 619 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 NUDT12Q9BQG2 462 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 NUAK2Q9H093 628 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 DYRK4Q9NR20 520 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 GIN1Q9NXP7 522 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 PCDHB2Q9Y5E7 798 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 FOXN3O00409 490 aaPredicted RBP10.73□□□□□ -0.69
VCL-201ENST00000211998 ZNF197O14709 1029 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 GH1P01241 217 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 CYBBP04839 570 aa10.73□□□□□ -0.69
VCL-201ENST00000211998 STIP1P31948 543 aaKnown RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms