RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Zdhhc24Q6IR37 284 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 C6.1alQ7M757 291 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Trim36Q80WG7 729 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Rtp1Q8C8C1 263 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 HnrnprQ8VHM5 632 aaKnown RBP16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Ddit4Q9D3F7 229 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 MtrA6H5Y3 1253 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Zfp558E9Q1J0 407 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 1700024B05RikE9Q6D7 167 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Vmn2r15L7N2A0 855 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Spink5Q148R4 1017 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 A1cfQ5YD48 595 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Orc2Q60862 576 aaKnown RBP16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Q6GQU0 248 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Epn3Q91W69 636 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Kif19Q99PT9 997 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Rhox3cA2AWM0 215 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Gm3173A6NAS3 172 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Slc4a9E9PUP3 929 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Gm3020E9Q3J7 150 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Gm2897K7N6T7 172 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Rhox3hL7MU37 215 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Kpna6O35345 536 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Ccnd3P30282 292 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Znf112Q0VAW7 879 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Rhox3aQ4TU90 215 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Als2clQ60I26 952 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 B3galnt2Q8BG28 504 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Gm3411Q8C7R2 150 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Rnf31Q924T7 1066 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 4930519G04RikQ9CPT7 205 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 BcorQ8CGN4 1759 aa16.03■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Zfp788E9Q980 884 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Vmn2r39L7N2E5 861 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Vmn2r1O70410 912 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Srebf2Q3U1N2 1130 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Znf598Q80YR4 908 aaKnown RBP16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Celf3Q8CIN6 465 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Capn15Q9JLG8 1095 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Atp6v1g2Q9WTT4 118 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Olfr391-psA0A0U1RNJ4 312 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Lcn6A2AJB9 181 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Pitpnm1O35954 1243 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 PtpreP49446 699 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Lzts1P60853 599 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Fbxw10Q5SUS0 1030 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Scube3Q66PY1 993 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 E2f7Q6S7F2 904 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Calhm4Q8CE93 315 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Kdelr1Q99JH8 212 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Mov10l1Q99MV5 1187 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Snx29Q9D3S3 818 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 ParvbQ9ES46 365 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 B4galt5Q9JMK0 388 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Trpc7Q9WVC5 862 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Pds5aQ6A026 1332 aa16.02■□□□□ 0.16
Ccdc88b-201ENSMUST00000113440 Siah3B2RWG3 268 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Mroh4G3X8W1 983 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 OgdhQ60597 1023 aaKnown RBP16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Acvrl1Q61288 502 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 NkrfQ8BY02 690 aaKnown RBP16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Ttc39bQ8BYY4 617 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Ppp6r2Q8R3Q2 923 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Sec14l2Q99J08 403 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Dpp3Q99KK7 738 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Rab27aQ9ERI2 221 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Nlrp1bA1Z198 1177 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Gm4871D3Z0W7 314 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Rad51ap2G3UW63 976 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Mfsd4b4J3QNS5 503 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Crabp2P22935 138 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Serping1P97290 504 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Kcnq1P97414 668 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Q8BGC1 442 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Tarsl2Q8BLY2 790 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Ints6lQ8BND4 861 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Ccdc134Q8C7V8 229 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 MafaQ8CF90 359 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Vmn1r214Q8R279 367 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Vmn1r64Q8R2B8 320 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Clptm1Q8VBZ3 664 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Cpne8Q9DC53 577 aa16.02■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Dennd5bA2RSQ0 1274 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Slc2a4P14142 509 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Hsdl2Q2TPA8 490 aaKnown RBP16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Arl14Q3SXC5 192 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Tab3Q571K4 716 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Fbxw2Q60584 422 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Xlr3cQ61806 226 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Dennd1aQ8K382 1016 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 MceeQ9D1I5 178 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Rps6kb2Q9Z1M4 485 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Cyp4a12bA2A974 508 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 2010300C02RikE9Q3M9 1175 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Tnfrsf11bO08712 401 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 YwhahP68510 246 aaKnown RBP16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Slc16a10Q3U9N9 512 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Mapre1Q61166 268 aaKnown RBP16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 Garem2Q6PAJ3 880 aa16.01■□□□□ 0.15
Ccdc88b-201ENSMUST00000113440 CyldQ80TQ2 952 aa16.01■□□□□ 0.15
Retrieved 100 of 22,080 RNA–protein pairs in 23.4 ms