RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MYH7BA7E2Y1 1941 aa5.93□□□□□ -1.46
SCN1A-216ENST00000637968 EFCAB6Q5THR3 1501 aa5.93□□□□□ -1.46
SCN1A-216ENST00000637968 TSPOAP1O95153 1857 aa5.93□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF701M0R085 212 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TRAF5O00463 557 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TTC4O95801 387 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ASNSP08243 561 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 KRT19P08727 400 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 T-ENOLP0DO92 83 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ITIH2P19823 946 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PRKAR1BP31321 381 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GPR85P60893 370 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 EXOSC10Q01780 885 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 RHAGQ02094 409 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 BFSP2Q13515 415 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FAM98CQ17RN3 349 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NAALADL2Q58DX5 795 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 AKAP4Q5JQC9 854 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C6orf52Q5T4I8 152 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CYP4A22Q5TCH4 519 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF600Q6ZNG1 722 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 STXBP4Q6ZWJ1 553 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MICU2Q8IYU8 434 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 LILRB2Q8N423 598 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 Q8N9G6 341 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SNX31Q8N9S9 440 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C12orf50Q8NA57 414 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ACTRT2Q8TDY3 377 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TMA16Q96EY4 203 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MAGED4Q96JG8 741 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 DCAF5Q96JK2 942 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZKSCAN3Q9BRR0 538 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SNX13Q9Y5W8 968 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ERVK-7P63135 1459 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PPRC1Q5VV67 1664 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PCDH11YQ9BZA8 1340 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 A0A1W2PPW3 197 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MIF4GDA9UHW6 222 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 APBA3O96018 575 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ATP5BP06576 529 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GYS1P13807 737 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 F8A1P23610 371 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CCT3P49368 545 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MFAP3P55082 362 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PUDPQ08623 228 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TLR1Q15399 786 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GRIK5Q16478 980 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 RUNDC3AQ59EK9 446 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C10orf62Q5T681 223 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 LGSNQ5TDP6 509 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SLC9A4Q6AI14 798 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 KCTD20Q7Z5Y7 419 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CCNYL1Q8N7R7 359 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 HCAR2Q8TDS4 363 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ASB12Q8WXK4 309 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TUBGCP3Q96CW5 907 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SLC39A13Q96H72 371 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CLPTM1LQ96KA5 538 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PANX3Q96QZ0 392 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SENP6Q9GZR1 1112 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MCM9Q9NXL9 1143 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SLC7A8Q9UHI5 535 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SPATA2Q9UM82 520 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PCDHA4Q9UN74 947 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CPQQ9Y646 472 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PFASO15067 1338 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NEDD4P46934 1319 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 INO80Q9ULG1 1556 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SAC3D1A6NKF1 404 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 H0Y626 953 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CFLARO15519 480 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MMP1P03956 469 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SMIM18P0DKX4 95 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NCF2P19878 526 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TNFAIP3P21580 790 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ITGA6P23229 1130 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PRDX6P30041 224 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FOXN2P32314 431 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GRIK1P39086 918 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 MAPK12P53778 367 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CYP4F2P78329 520 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 GBE1Q04446 702 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 CYP4F3Q08477 520 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 PDK1Q15118 436 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NEDD8Q15843 81 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 DGUOKQ16854 277 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FAM47CQ5HY64 1035 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 DCUN1D2Q6PH85 259 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 FKBP9P1Q75LS8 142 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 METTL3Q86U44 580 aaKnown RBP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SLC15A4Q8N697 577 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 SLC4A11Q8NBS3 891 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 AKAP1Q92667 903 aaKnown RBP eCLIP5.92□□□□□ -1.46
SCN1A-216ENST00000637968 C18orf8Q96DM3 657 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TMEM87BQ96K49 555 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF347Q96SE7 839 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 NYXQ9GZU5 481 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 ZNF224Q9NZL3 707 aa5.92□□□□□ -1.46
SCN1A-216ENST00000637968 TNFRSF10DQ9UBN6 386 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms