RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CDK5RAP1Q96SZ6 601 aaKnown RBP20.28■□□□□ 0.84
UPF1-209ENST00000600310 DNAJC7Q99615 494 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 PLA2G2FQ9BZM2 168 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 SYNCQ9H7C4 482 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 ABCC13Q9NSE7 274 aa20.28■□□□□ 0.84
UPF1-209ENST00000600310 SEPT11Q9NVA2 429 aaKnown RBP20.28■□□□□ 0.84
UPF1-209ENST00000600310 DENND4CQ5VZ89 1909 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 NCOR1O75376 2440 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 OBSL1O75147 1896 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 DPYSL4O14531 572 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 MFAP3LO75121 409 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 TBX18O95935 607 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 LTFP02788 710 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 MBL2P11226 248 aaPredicted RBP20.27■□□□□ 0.84
UPF1-209ENST00000600310 TCF3P15923 654 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 MMP8P22894 467 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 CENPCQ03188 943 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 TDGQ13569 410 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 VITQ6UXI7 678 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 BEND5Q7L4P6 421 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 PHF13Q86YI8 300 aaPredicted RBP20.27■□□□□ 0.84
UPF1-209ENST00000600310 DRC7Q8IY82 874 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 DEPDC1BQ8WUY9 529 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 LRRC3BQ96PB8 259 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 NACA2Q9H009 215 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 CCL26Q9Y258 94 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 ANAPC1Q9H1A4 1944 aa20.27■□□□□ 0.84
UPF1-209ENST00000600310 AKR1B15C9JRZ8 316 aaPredicted RBP20.26■□□□□ 0.83
UPF1-209ENST00000600310 DDX3XO00571 662 aaKnown RBP eCLIP20.26■□□□□ 0.83
UPF1-209ENST00000600310 ADCY5O95622 1261 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 GLI1P08151 1106 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 NSFP46459 744 aaKnown RBP20.26■□□□□ 0.83
UPF1-209ENST00000600310 ADKP55263 362 aaKnown RBP20.26■□□□□ 0.83
UPF1-209ENST00000600310 ZXDBP98169 803 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 TDRD12Q587J7 1177 aaKnown RBP20.26■□□□□ 0.83
UPF1-209ENST00000600310 C10orf120Q5SQS8 335 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 OR6B2Q6IFH4 312 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 OLFML1Q6UWY5 402 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 FAM183BPQ6ZVS7 135 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 CNGA4Q8IV77 575 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 MFSD6LQ8IWD5 586 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 SLC30A5Q8TAD4 765 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 BPIFB1Q8TDL5 484 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 GOLGA1Q92805 767 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 TRIM62Q9BVG3 475 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 ABHD10Q9NUJ1 306 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 ASNSD1Q9NWL6 643 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 DNMT3LQ9UJW3 386 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 NUDT5Q9UKK9 219 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 SORCS3Q9UPU3 1222 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 CPQQ9Y646 472 aa20.26■□□□□ 0.83
UPF1-209ENST00000600310 FYNP06241 537 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 PSMC3P17980 439 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 CDC25BP30305 580 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 SCNN1AP37088 669 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 SLC6A3Q01959 620 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 GOLGA8FQ08AF8 430 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 GOLGA8DPQ0D2H9 430 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 PTP4A2Q12974 167 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 USP4Q13107 963 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 TSR1Q2NL82 804 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 EFHC1Q5JVL4 640 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 ACAD10Q6JQN1 1059 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 WDR59Q6PJI9 974 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 MMS22LQ6ZRQ5 1243 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 TOGARAM2Q6ZUX3 1019 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 RSRC2Q7L4I2 434 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 XYLT1Q86Y38 959 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 RIN3Q8TB24 985 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 SH3RF2Q8TEC5 729 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 RNF139Q8WU17 664 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 EDEM1Q92611 657 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 FAM149B1Q96BN6 582 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 PIWIL1Q96J94 861 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 ZFRQ96KR1 1074 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 KLF16Q9BXK1 252 aaPredicted RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 OLA1Q9NTK5 396 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 ZNHIT6Q9NWK9 470 aaKnown RBP20.25■□□□□ 0.83
UPF1-209ENST00000600310 SMPD4Q9NXE4 827 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 ARHGAP20Q9P2F6 1191 aa20.25■□□□□ 0.83
UPF1-209ENST00000600310 FAM170AA1A519 330 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 LEFTY2O00292 366 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 MDM4O15151 490 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 PLEKP08567 350 aaPredicted RBP20.24■□□□□ 0.83
UPF1-209ENST00000600310 GZMAP12544 262 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 YWHAZP63104 245 aaKnown RBP20.24■□□□□ 0.83
UPF1-209ENST00000600310 FCHO2Q0JRZ9 810 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 ZNF77Q15935 545 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 C2CD6Q53TS8 623 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 PPP1R2P3Q6NXS1 205 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 MSANTD2Q6P1R3 559 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 SLC26A9Q7LBE3 791 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 VPS36Q86VN1 386 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 DDX42Q86XP3 938 aaKnown RBP eCLIP20.24■□□□□ 0.83
UPF1-209ENST00000600310 KIAA1958Q8N8K9 716 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 KHSRPQ92945 711 aaKnown RBP eCLIP20.24■□□□□ 0.83
UPF1-209ENST00000600310 C11orf70Q9BRQ4 267 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 TRMT61BQ9BVS5 477 aaKnown RBP20.24■□□□□ 0.83
UPF1-209ENST00000600310 POPDC2Q9HBU9 364 aa20.24■□□□□ 0.83
UPF1-209ENST00000600310 MUTYHQ9UIF7 546 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms