RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 DENND1BQ6P3S1 775 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ALKBH5Q6P6C2 394 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 FAM171BQ6P995 826 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 KIAA1328Q86T90 577 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 FUKQ8N0W3 1084 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 C1orf131Q8NDD1 294 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 C2orf15Q8WU43 125 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 FGF14Q92915 247 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ZNF707Q96C28 371 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 TMEM209Q96SK2 561 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 LPIN3Q9BQK8 851 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 B3GNT5Q9BYG0 378 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ADAM33Q9BZ11 813 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ZNF518BQ9C0D4 1074 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 LHX5Q9H2C1 402 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ABI2Q9NYB9 513 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 NAGPAQ9UK23 515 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 PCDHB5Q9Y5E4 795 aa12.7□□□□□ -0.38
SHKBP1-213ENST00000597325 ADAMTS20P59510 1910 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SHISA7A6NL88 538 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 TMCO5BA8MYB1 307 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 AP1G2O75843 785 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 GZMAP12544 262 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 RPL17P18621 184 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 KLRC2P26717 231 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 OR1D2P34982 312 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SNX16P57768 344 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 NOMO3P69849 1222 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 GPR17Q13304 367 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 CCDC142Q17RM4 750 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SLC8B1Q6J4K2 584 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 MAMSTRQ6ZN01 415 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 PRR23BQ6ZRT6 265 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 TOGARAM2Q6ZUX3 1019 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 ANKRD52Q8NB46 1076 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 ACRBPQ8NEB7 543 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SLC30A5Q8TAD4 765 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 UBA3Q8TBC4 463 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SPPL2BQ8TCT7 592 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 TRIM11Q96F44 468 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 FUBP3Q96I24 572 aaKnown RBP eCLIP12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 PGLYRP2Q96PD5 576 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 PCDHB18PQ96TA0 734 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 PKMYT1Q99640 499 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 DESI2Q9BSY9 194 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 EMILIN2Q9BXX0 1053 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 MIS12Q9H081 205 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 SYNCQ9H7C4 482 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 ABCB6Q9NP58 842 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 MAN1C1Q9NR34 630 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 FNIP2Q9P278 1114 aa12.69□□□□□ -0.38
SHKBP1-213ENST00000597325 CLDN5O00501 218 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CCP110O43303 1012 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 RTN2O75298 545 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 RFPL2O75678 378 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 LCA5LO95447 670 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CYP1A1P04798 512 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 ADH1AP07327 375 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 SPINK2P20155 84 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CDH5P33151 784 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 ROR1Q01973 937 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CENPCQ03188 943 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CFAP221Q4G0U5 840 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 ACAD10Q6JQN1 1059 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 PARM1Q6UWI2 310 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 LRRTM3Q86VH5 581 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 TTC30AQ86WT1 665 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 PALB2Q86YC2 1186 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 ZNF687Q8N1G0 1237 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 OLIG1Q8TAK6 271 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 CPA5Q8WXQ8 436 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 DUSP16Q9BY84 665 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 DMAP1Q9NPF5 467 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 ST7Q9NRC1 585 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 TMLHEQ9NVH6 421 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 PCDHA13Q9Y5I0 950 aa12.68□□□□□ -0.38
SHKBP1-213ENST00000597325 FAM170AA1A519 330 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 WDR27A2RRH5 827 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 MTMR11A4FU01 709 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 XPO1O14980 1071 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 TRIM66O15016 1216 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 ADAM12O43184 909 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 ZSCAN12O43309 604 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 FTLP02792 175 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 CALB1P05937 261 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 H2AFZP0C0S5 128 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 MYBL1P10243 752 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 UNGP13051 313 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 BDNFP23560 247 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 GRIK1P39086 918 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 MAGEA1P43355 309 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 CDR1P51861 262 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 MAP3K7CLP57077 242 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 PDE4CQ08493 712 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 PDCLQ13371 301 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 AASDHQ4L235 1098 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 LIN9Q5TKA1 542 aa12.67□□□□□ -0.38
SHKBP1-213ENST00000597325 TPGS2Q68CL5 300 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms