RNA–Protein interactions for RNA: ENST00000586813.5

TRAF4-216, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-216ENST00000586813 MBD1Q9UIS9 605 aaPredicted RBP20.46■□□□□ 0.87
TRAF4-216ENST00000586813 FRMD4BQ9Y2L6 1034 aa20.46■□□□□ 0.87
TRAF4-216ENST00000586813 FRYQ5TBA9 3013 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 CDX4O14627 284 aaPredicted RBP20.45■□□□□ 0.86
TRAF4-216ENST00000586813 GIPC1O14908 333 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 IKBKBO14920 756 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 GREM1O60565 184 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 FAM200BP0CF97 657 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 PFKFB1P16118 471 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 PTGER3P43115 390 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 IRX4P78413 519 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 C1orf220Q5T0J3 134 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 ARMCX6Q7L4S7 300 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 GPRIN1Q7Z2K8 1008 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 TMEFF1Q8IYR6 380 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 PGBD3Q8N328 593 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 CYLDQ9NQC7 956 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 EVLQ9UI08 416 aaPredicted RBP20.45■□□□□ 0.86
TRAF4-216ENST00000586813 ADAMTS9Q9P2N4 1935 aa20.45■□□□□ 0.86
TRAF4-216ENST00000586813 CYP26A1O43174 497 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 TBX18O95935 607 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 HLA-DRAP01903 254 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 MYL1P05976 194 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 ADORA2BP29275 332 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 INCA1Q0VD86 236 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 BYSLQ13895 437 aaKnown RBP20.44■□□□□ 0.86
TRAF4-216ENST00000586813 TRIM61Q5EBN2 209 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 SPDYCQ5MJ68 293 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 SH3PXD2AQ5TCZ1 1133 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 CLEC20AQ6ZU45 233 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 NUDT18Q6ZVK8 323 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 HTR3DQ70Z44 454 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 JAKMIP2Q96AA8 810 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 TWNKQ96RR1 684 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 KLF16Q9BXK1 252 aaPredicted RBP20.44■□□□□ 0.86
TRAF4-216ENST00000586813 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.44■□□□□ 0.861e-9■■■■■ 64.8
TRAF4-216ENST00000586813 OSER1Q9NX31 292 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 USP25Q9UHP3 1055 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 HCN2Q9UL51 889 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 SCML2Q9UQR0 700 aa20.44■□□□□ 0.86
TRAF4-216ENST00000586813 CEP295Q9C0D2 2601 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 A0A1B0GVL5 298 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 HHLA1C9JL84 531 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 NEDD8-MDP1E9PL57 170 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 TRIM24O15164 1050 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 CALUO43852 315 aaPredicted RBP20.43■□□□□ 0.86
TRAF4-216ENST00000586813 CACNG3O60359 315 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 HOXB2P14652 356 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 TRIM21P19474 475 aaKnown RBP20.43■□□□□ 0.86
TRAF4-216ENST00000586813 GOLGA8FQ08AF8 430 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 GOLGA8DPQ0D2H9 430 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 ZNF252P-AS1Q0IIN9 211 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 LMAN2Q12907 356 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 GRAMD4Q6IC98 578 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 MIB1Q86YT6 1006 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 SYT12Q8IV01 421 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 HNRNPABQ99729 332 aaKnown RBP20.43■□□□□ 0.86
TRAF4-216ENST00000586813 IMPG2Q9BZV3 1241 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 TMEM74BQ9NUR3 256 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 DNAJC17Q9NVM6 304 aaKnown RBP20.43■□□□□ 0.86
TRAF4-216ENST00000586813 TRAF3IP3Q9Y228 551 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 HPSEQ9Y251 543 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 STARD13Q9Y3M8 1113 aa20.43■□□□□ 0.86
TRAF4-216ENST00000586813 ASCC3Q8N3C0 2202 aaKnown RBP20.43■□□□□ 0.86
TRAF4-216ENST00000586813 CFAP47Q6ZTR5 3102 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 MAPK13O15264 365 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 GABRG2P18507 467 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 CSRP1P21291 193 aaKnown RBP20.42■□□□□ 0.86
TRAF4-216ENST00000586813 CMA1P23946 247 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 NTSR1P30989 418 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 ATP5C1P36542 298 aaKnown RBP20.42■□□□□ 0.86
TRAF4-216ENST00000586813 VAMP7P51809 220 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 LYSMD4Q5XG99 296 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 EGFLAMQ63HQ2 1017 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 BBS2Q9BXC9 721 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 NUSAP1Q9BXS6 441 aaKnown RBP20.42■□□□□ 0.86
TRAF4-216ENST00000586813 PNPLA8Q9NP80 782 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 MARK1Q9P0L2 795 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 CALCOCO1Q9P1Z2 691 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 LSM7Q9UK45 103 aaKnown RBP20.42■□□□□ 0.86
TRAF4-216ENST00000586813 PCDHA5Q9Y5H7 936 aa20.42■□□□□ 0.86
TRAF4-216ENST00000586813 ATXN2Q99700 1313 aaKnown RBP20.42■□□□□ 0.86
TRAF4-216ENST00000586813 PCDH15Q96QU1 1955 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 A0A1W2PQF6 199 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 TRIM49P0CI25 452 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 TRIM49CP0CI26 452 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 CEACAM1P13688 526 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 TYRP14679 529 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 ACO1P21399 889 aaKnown RBP20.41■□□□□ 0.86
TRAF4-216ENST00000586813 NR2F2P24468 414 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 DPP6P42658 865 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 WASP42768 502 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 UAP1L1Q3KQV9 507 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 PEAR1Q5VY43 1037 aaPredicted RBP20.41■□□□□ 0.86
TRAF4-216ENST00000586813 KLHDC10Q6PID8 442 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 TPGS1Q6ZTW0 290 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 TAS1R2Q8TE23 839 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 CYFIP2Q96F07 1278 aa20.41■□□□□ 0.86
TRAF4-216ENST00000586813 XPO6Q96QU8 1125 aaKnown RBP20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms