RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SMPD4Q9NXE4 827 aa15.3■□□□□ 0.04
SMARCE1-216ENST00000580419 GMIPQ9P107 970 aa15.3■□□□□ 0.04
SMARCE1-216ENST00000580419 WDR35Q9P2L0 1181 aa15.3■□□□□ 0.04
SMARCE1-216ENST00000580419 HMGXB4Q9UGU5 601 aa15.3■□□□□ 0.04
SMARCE1-216ENST00000580419 ZNF510Q9Y2H8 683 aa15.3■□□□□ 0.04
SMARCE1-216ENST00000580419 CACNG3O60359 315 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 SMC2O95347 1197 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 DPP6P42658 865 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 PLA2G4AP47712 749 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 BYSLQ13895 437 aaKnown RBP15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 E2F5Q15329 346 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 LPAL2Q16609 132 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 LY6G5CQ5SRR4 150 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 SPOPLQ6IQ16 392 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 KBTBD6Q86V97 674 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 ARHGAP18Q8N392 663 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 IL17RCQ8NAC3 791 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 TWNKQ96RR1 684 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.29■□□□□ 0.041e-6■■■■■ 127.5
SMARCE1-216ENST00000580419 ARHGEF4Q9NR80 690 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 DEC1Q9P2X7 70 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 KIAA1257Q9ULG3 409 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 CACNA1EQ15878 2313 aa15.29■□□□□ 0.04
SMARCE1-216ENST00000580419 CHD8Q9HCK8 2581 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 TM4SF5O14894 197 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 TRIM49P0CI25 452 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 TRIM49CP0CI26 452 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 RAB41Q5JT25 222 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 PMS2CLQ68D20 193 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 HHIPQ96QV1 700 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 TSG101Q99816 390 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 METTL14Q9HCE5 456 aaKnown RBP15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 POLMQ9NP87 494 aaPredicted RBP15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 FAM49BQ9NUQ9 324 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 DNMT3LQ9UJW3 386 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 LSM7Q9UK45 103 aaKnown RBP15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 MAPK8IP1Q9UQF2 711 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 CACNA1BQ00975 2339 aa15.28■□□□□ 0.04
SMARCE1-216ENST00000580419 MED19A0JLT2 244 aaPredicted RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 BCLAF3A2AJT9 711 aaKnown RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 GOLGA6L4A6NEF3 574 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 GFRA2O00451 464 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 NPC1O15118 1278 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 TULP3O75386 442 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 CLSTN1O94985 981 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 ACO1P21399 889 aaKnown RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 HOXD12P35452 270 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 PRCPP42785 496 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 ZNF132P52740 706 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 SLC8A3P57103 927 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 YWHAEP62258 255 aaKnown RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 COG7P83436 770 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 IFRD2Q12894 506 aaPredicted RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 PM20D1Q6GTS8 502 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 Q6ZNB5 142 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 BBS7Q8IWZ6 715 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 SCML4Q8N228 414 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 TERB1Q8NA31 727 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 C12orf50Q8NA57 414 aaPredicted RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 ANKRD52Q8NB46 1076 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 TMEM176AQ96HP8 235 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 DHTKD1Q96HY7 919 aaPredicted RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 CHAMP1Q96JM3 812 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 XPO6Q96QU8 1125 aaKnown RBP15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 DCLK3Q9C098 648 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 NACA2Q9H009 215 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 ARRDC1-AS1Q9H2J1 176 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 CISHQ9NSE2 258 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 FBXO10Q9UK96 956 aa15.27■□□□□ 0.04
SMARCE1-216ENST00000580419 PCNX2A6NKB5 2137 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 P4HA2O15460 535 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 RALAP11233 206 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 TBXAS1P24557 533 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 CHKAP35790 457 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 MPLP40238 635 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 P2RY2P41231 377 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 SLC6A11P48066 632 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 PXNP49023 591 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 RAD23BP54727 409 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 STIM1Q13586 685 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 C2orf27AQ580R0 203 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 PPP1R26Q5T8A7 1209 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 GPRIN1Q7Z2K8 1008 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 C12orf40Q86WS4 652 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 SLC4A11Q8NBS3 891 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 TTC16Q8NEE8 873 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 SEMA4DQ92854 862 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 CEP63Q96MT8 703 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 IRX2Q9BZI1 471 aaPredicted RBP15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 OSER1Q9NX31 292 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 SLC27A6Q9Y2P4 619 aa15.26■□□□□ 0.03
SMARCE1-216ENST00000580419 TNRC6BQ9UPQ9 1833 aaKnown RBP15.25■□□□□ 0.03
SMARCE1-216ENST00000580419 PSMA7O14818 248 aa15.25■□□□□ 0.03
SMARCE1-216ENST00000580419 ADRB1P08588 477 aa15.25■□□□□ 0.03
SMARCE1-216ENST00000580419 RARGP13631 454 aa15.25■□□□□ 0.03
SMARCE1-216ENST00000580419 ADORA2BP29275 332 aa15.25■□□□□ 0.03
SMARCE1-216ENST00000580419 PNOCQ13519 176 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms