RNA–Protein interactions for RNA: ENST00000578049.3

SEC22B-201, Transcript of SEC22 homolog B, vesicle trafficking protein (gene/pseudogene), humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC22B, Length 6,922 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC22B-201ENST00000578049 CEP78Q5JTW2 689 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 AAGABQ6PD74 315 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CBWD2Q8IUF1 395 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 KATNAL2Q8IYT4 538 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 KIAA0895Q8NCT3 520 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 SRPK1Q96SB4 655 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ZMYM2Q9UBW7 1377 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ERI2A8K979 691 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 STX7O15400 261 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 TPST1O60507 370 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 RPLP2P05387 115 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 GNL1P36915 607 aaPredicted RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 C1DQ13901 141 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 HIST2H2ACQ16777 129 aaPredicted RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ATP6AP1LQ52LC2 224 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 HIST2H2AA3Q6FI13 130 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 FAM45BPQ6NSW5 357 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 TDRD5Q8NAT2 981 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ETAA1Q9NY74 926 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 AFF4Q9UHB7 1163 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CLOCKO15516 846 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ICAM1P05362 532 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CRABP2P29373 138 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 CASP4P49662 377 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 TBCELQ5QJ74 424 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 DHFR2Q86XF0 187 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NSMCE2Q96MF7 247 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 C2orf81A6NN90 581 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 HACD1B0YJ81 288 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 YY1P25490 414 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 RRM2P31350 389 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 RPL5P46777 297 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NR1H2P55055 460 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 TIMM50Q3ZCQ8 353 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 GLMNQ92990 594 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 HES6Q96HZ4 224 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 VAT1Q99536 393 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 MYLK2Q9H1R3 596 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 LRMDAQ9H2I8 198 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 DMAP1Q9NPF5 467 aaPredicted RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 USE1Q9NZ43 259 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 TMCC3Q9ULS5 477 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 USP18Q9UMW8 372 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ETFBP38117 255 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ZNF772Q68DY9 489 aaPredicted RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NOTUMQ6P988 496 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 NUDT18Q6ZVK8 323 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 ETNPPLQ8TBG4 499 aa11.06□□□□□ -0.64
SEC22B-201ENST00000578049 QTRT2Q9H974 415 aaKnown RBP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.06□□□□□ -0.64
SEC22B-201ENST00000578049 E9PCH4 1651 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 NPY2RP49146 381 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 RRP1BQ14684 758 aaKnown RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 PLA2G4FQ68DD2 849 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 CCDC81Q6ZN84 652 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ARCQ7LC44 396 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ATP6V0D2Q8N8Y2 350 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 MRPL48Q96GC5 212 aaKnown RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 C1orf50Q9BV19 199 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 TRHDEQ9UKU6 1024 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 SIK3Q9Y2K2 1263 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 FAM153BP0C7A2 387 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ATP6V1C1P21283 382 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 DGUOKQ16854 277 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 FAM153CQ494X1 144 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 NIPA1Q7RTP0 329 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 STRA8Q7Z7C7 330 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 CENPLQ8N0S6 344 aaPredicted RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ACMSDQ8TDX5 336 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 SPATA16Q9BXB7 569 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 PDZK1P1A8MUH7 402 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 DDX3XO00571 662 aaKnown RBP eCLIP11.05□□□□□ -0.646e-27■□□□□ 10.3
SEC22B-201ENST00000578049 PRPF4O43172 522 aaKnown RBP eCLIP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 SKAP2O75563 359 aaPredicted RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 GRIK1P39086 918 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ITGA1P56199 1179 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 TOP3AQ13472 1001 aaPredicted RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 SPANXN3Q5MJ09 141 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 SV2AQ7L0J3 742 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 CAMK1DQ8IU85 385 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 OR6Y1Q8NGX8 325 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 HDAC7Q8WUI4 952 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 KAZALD1Q96I82 304 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 TBKBP1A7MCY6 615 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 RARAP10276 462 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 PECAM1P16284 738 aaPredicted RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 PGAM1P18669 254 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 NPTX2P47972 431 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 RPS6P62753 249 aaKnown RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 CNGA2Q16280 664 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 INAQ16352 499 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 TTMPQ5BVD1 217 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 NOP9Q86U38 636 aaKnown RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 TSEN2Q8NCE0 465 aaKnown RBP11.05□□□□□ -0.64
SEC22B-201ENST00000578049 ZNF280CQ8ND82 737 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 MPP4Q96JB8 637 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 CPNE1Q99829 537 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 PI4K2AQ9BTU6 479 aa11.05□□□□□ -0.64
SEC22B-201ENST00000578049 UGT2B28Q9BY64 529 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms