RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TMTC4Q5T4D3 741 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 KIAA1614Q5VZ46 1190 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 NBPF5PQ86XG9 351 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 SLC44A2Q8IWA5 706 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 ZNF713Q8N859 430 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 SUPT20HQ8NEM7 779 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 CPT1CQ8TCG5 803 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 ZNF480Q8WV37 535 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 SNX33Q8WV41 574 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 CLMNQ96JQ2 1002 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 TRAPPC9Q96Q05 1148 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 DDX23Q9BUQ8 820 aaKnown RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 HAPLN2Q9GZV7 340 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 RNPEPQ9H4A4 650 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 ACAD9Q9H845 621 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 HEYLQ9NQ87 328 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 LANCL2Q9NS86 450 aa6.37□□□□□ -1.39
VPS53-219ENST00000576019 POLR3BQ9NW08 1133 aaPredicted RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 ANGEL1Q9UNK9 670 aaKnown RBP6.37□□□□□ -1.39
VPS53-219ENST00000576019 FRYQ5TBA9 3013 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 H0Y858 1186 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 N4BP3O15049 544 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 DNPH1O43598 174 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 PTP4A3O75365 173 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 FSBPO95073 299 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 ANXA1P04083 346 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 PECAM1P16284 738 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 EGR1P18146 543 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 FPR1P21462 350 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 ABCD3P28288 659 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 MAPK4P31152 587 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 POLE2P56282 527 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 GALNT2Q10471 571 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 SCAPQ12770 1279 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 MTM1Q13496 603 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 HABP2Q14520 560 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 DGKDQ16760 1214 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 ATG16L1Q676U5 607 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 RAP1GAP2Q684P5 730 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 GALNT18Q6P9A2 607 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 R3HCC1LQ7Z5L2 792 aaKnown RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 SP8Q8IXZ3 490 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 ADSSL1Q8N142 457 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 SLC15A4Q8N697 577 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 WDR48Q8TAF3 677 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 KCNG4Q8TDN1 519 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 ZNF384Q8TF68 577 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 IPCEF1Q8WWN9 437 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 STON2Q8WXE9 905 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 GOLGA1Q92805 767 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 BAG1Q99933 345 aaPredicted RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS53-219ENST00000576019 EPS8L2Q9H6S3 715 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 C7orf69Q9H7B7 122 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 MKNK2Q9HBH9 465 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 A1CFQ9NQ94 594 aaKnown RBP6.36□□□□□ -1.39
VPS53-219ENST00000576019 TLR9Q9NR96 1032 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 DLL3Q9NYJ7 618 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 DTLQ9NZJ0 730 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 TBX20Q9UMR3 447 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 TBC1D30Q9Y2I9 924 aa6.36□□□□□ -1.39
VPS53-219ENST00000576019 MYO18BQ8IUG5 2567 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 ZC3H12DA2A288 527 aaKnown RBP6.35□□□□□ -1.39
VPS53-219ENST00000576019 MASP2O00187 686 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 RAB27BO00194 218 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 AP3D1O14617 1153 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 DHX16O60231 1041 aaKnown RBP6.35□□□□□ -1.39
VPS53-219ENST00000576019 UNC5CO95185 931 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 LRG1P02750 347 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 F13BP05160 661 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 PRKCBP05771 671 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 APOA4P06727 396 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 HSP90AB1P08238 724 aaKnown RBP6.35□□□□□ -1.39
VPS53-219ENST00000576019 HOXA10P31260 410 aaPredicted RBP6.35□□□□□ -1.39
VPS53-219ENST00000576019 NBL1P41271 181 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 BCAT1P54687 386 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 IL13RA1P78552 427 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 BECN1Q14457 450 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TARBP2Q15633 366 aaKnown RBP6.35□□□□□ -1.39
VPS53-219ENST00000576019 PKN1Q16512 942 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 MAPKAPK3Q16644 382 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 ATP2B3Q16720 1220 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 RILPL1Q5EBL4 403 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 SNX30Q5VWJ9 437 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 NFRKBQ6P4R8 1299 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 KIAA0408Q6ZU52 694 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 BBS12Q6ZW61 710 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 CCDC28AQ8IWP9 274 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 YAF2Q8IY57 180 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TMEM57Q8N5G2 664 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 PIK3C3Q8NEB9 887 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 REPS2Q8NFH8 660 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 OR7D4Q8NG98 312 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 PPP1R14CQ8TAE6 165 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 RSPH1Q8WYR4 309 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 RNF125Q96EQ8 232 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 CYFIP2Q96F07 1278 aa6.35□□□□□ -1.39
VPS53-219ENST00000576019 TOE1Q96GM8 510 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 164.9 ms