RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 PDE2AO00408 941 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-209ENST00000573474 PRRG1O14668 218 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 PRPSAP2O60256 369 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 LPXNO60711 386 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ZRANB2O95218 330 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ADH1AP07327 375 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 CTAGE8P0CG41 777 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ATF6P18850 670 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 IL1R2P27930 398 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 GJC1P36383 396 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 CETN2P41208 172 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ALDH1A3P47895 512 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ERVFC1P60507 584 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 USP46P62068 366 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ZNF211Q13398 564 aaPredicted RBP14.29□□□□□ -0.12
CCDC40-209ENST00000573474 BOLA3Q53S33 107 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 SYPL2Q5VXT5 272 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 BTBD8Q5XKL5 378 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 BNIPLQ7Z465 357 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 SCD5Q86SK9 330 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 CTAGE6Q86UF2 777 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 CTAGE4Q8IX94 777 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 MRPL43Q8N983 215 aaKnown RBP14.29□□□□□ -0.12
CCDC40-209ENST00000573474 GIPC2Q8TF65 315 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 FBXO32Q969P5 355 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 RBM41Q96IZ5 413 aaKnown RBP14.29□□□□□ -0.12
CCDC40-209ENST00000573474 RPGRIP1Q96KN7 1286 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 ZWILCHQ9H900 591 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 PCSK1NQ9UHG2 260 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 PATJQ8NI35 1801 aa14.29□□□□□ -0.12
CCDC40-209ENST00000573474 A0A1W2PQH9 124 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 C2orf71A6NGG8 1288 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 FSCN2O14926 492 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 F9P00740 461 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 TFE3P19532 575 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-209ENST00000573474 DNAJB1P25685 340 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 KLRC2P26717 231 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 RDXP35241 583 aaKnown RBP14.28□□□□□ -0.12
CCDC40-209ENST00000573474 PSEN1P49768 467 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 HDAC4P56524 1084 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 ITIH3Q06033 890 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 MTMR3Q13615 1198 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 RAB30Q15771 203 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 ATP13A4Q4VNC1 1196 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 ODF2Q5BJF6 829 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 ZFYVE27Q5T4F4 411 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 PLPP4Q5VZY2 271 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 TXNRD3NBQ6F5E7 133 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 PDE12Q6L8Q7 609 aaKnown RBP14.28□□□□□ -0.12
CCDC40-209ENST00000573474 SCYL2Q6P3W7 929 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 LILRA6Q6PI73 481 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 STKLD1Q8NE28 680 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 MYRIPQ8NFW9 859 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 SLC7A14Q8TBB6 771 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 TEKT4Q8WW24 435 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 EDEM1Q92611 657 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 PGAP3Q96FM1 320 aaPredicted RBP14.28□□□□□ -0.12
CCDC40-209ENST00000573474 TTLL2Q9BWV7 592 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 TMEM51Q9NW97 253 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 SMARCAL1Q9NZC9 954 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 GMIPQ9P107 970 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 MSRAQ9UJ68 235 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 MTUS1Q9ULD2 1270 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 YBX2Q9Y2T7 364 aaKnown RBP14.28□□□□□ -0.12
CCDC40-209ENST00000573474 YIPF1Q9Y548 306 aa14.28□□□□□ -0.12
CCDC40-209ENST00000573474 H3BNC9 293 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 M0QYT0 321 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 GRM6O15303 877 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 TGM5O43548 720 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 C1RP00736 705 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 FGGP02679 453 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 KRT1P04264 644 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 CSH1P0DML2 217 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 CSH2P0DML3 217 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 RARAP10276 462 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 GBP1P32455 592 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 BMP8BP34820 402 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 EPHB3P54753 998 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 COPS2P61201 443 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 TUBB4BP68371 445 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 DEUP1Q05D60 604 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 TAF10Q12962 218 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 PLD1Q13393 1074 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 GPM6BQ13491 265 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 VEPH1Q14D04 833 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 LONRF2Q1L5Z9 754 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 RAB6CQ53S08 254 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 OTUD1Q5VV17 481 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-209ENST00000573474 AADACL2Q6P093 401 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 SPRED2Q7Z698 418 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 CMASQ8NFW8 434 aaPredicted RBP14.27□□□□□ -0.13
CCDC40-209ENST00000573474 MICAL1Q8TDZ2 1067 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 OVCA2Q8WZ82 227 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 SLITRK1Q96PX8 696 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 PEBP4Q96S96 227 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 ADAM33Q9BZ11 813 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 RAB6CQ9H0N0 254 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 NMUR1Q9HB89 426 aa14.27□□□□□ -0.13
CCDC40-209ENST00000573474 TLR8Q9NR97 1041 aaKnown RBP14.27□□□□□ -0.13
CCDC40-209ENST00000573474 INSL5Q9Y5Q6 135 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms