RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 SF3B3Q15393 1217 aaKnown RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 SP5Q6BEB4 398 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 IL17DQ8TAD2 202 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 RRP36Q96EU6 259 aaKnown RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 SLC26A6Q9BXS9 759 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 ARHGAP39Q9C0H5 1083 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 TMX4Q9H1E5 349 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 DEF6Q9H4E7 631 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 UBN1Q9NPG3 1134 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 C19orf53Q9UNZ5 99 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 CA12O43570 354 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 TIRAPP58753 221 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 ACTR2P61160 394 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 FOXD4Q12950 439 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 ACOX1Q15067 660 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 B3GALNT2Q8NCR0 500 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 PTCD3Q96EY7 689 aaKnown RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 PRR11Q96HE9 360 aaPredicted RBP6.56□□□□□ -1.36
UBR1-208ENST00000569066 BOD1Q96IK1 185 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 TWNKQ96RR1 684 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 GLOD4Q9HC38 313 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 WASH6PQ9NQA3 447 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 G6PC2Q9NQR9 355 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 TMEM160Q9NX00 188 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 CEP72Q9P209 647 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 ASAP1Q9ULH1 1129 aa6.56□□□□□ -1.36
UBR1-208ENST00000569066 PLSCR1O15162 318 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 ITGB3P05106 788 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 IL6RP08887 468 aaPredicted RBP6.55□□□□□ -1.36
UBR1-208ENST00000569066 ACRV1P26436 265 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 AARSP49588 968 aaKnown RBP eCLIP6.55□□□□□ -1.36
UBR1-208ENST00000569066 POLE2P56282 527 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 ADAM17P78536 824 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 UBE3AQ05086 875 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 RNASELQ05823 741 aaKnown RBP6.55□□□□□ -1.36
UBR1-208ENST00000569066 CSHL1Q14406 222 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 SPDYE7PQ495Y7 208 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 TREML2Q5T2D2 321 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 GPATCH4Q5T3I0 446 aaKnown RBP6.55□□□□□ -1.36
UBR1-208ENST00000569066 TOR1AIP2Q8NFQ8 470 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 PKNOX2Q96KN3 472 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 TEPSINQ96N21 525 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 FBXO9Q9UK97 447 aaPredicted RBP6.55□□□□□ -1.36
UBR1-208ENST00000569066 FAM90A20PA6NIJ5 464 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 PRSS47A8MTI9 375 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 WDR47O94967 919 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 BFSP2Q13515 415 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 R3HDM1Q15032 1099 aaKnown RBP6.55□□□□□ -1.36
UBR1-208ENST00000569066 GPR149Q86SP6 731 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 TMPRSS6Q8IU80 811 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 SYNE4Q8N205 404 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 ZNF276Q8N554 614 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 EXTL1Q92935 676 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 LOXL4Q96JB6 756 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 TMEM74BQ9NUR3 256 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 DNAJC16Q9Y2G8 782 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 PCDHB2Q9Y5E7 798 aa6.55□□□□□ -1.36
UBR1-208ENST00000569066 SETD1BQ9UPS6 1966 aaKnown RBP6.54□□□□□ -1.36
UBR1-208ENST00000569066 SLC38A8A6NNN8 435 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 DEUP1Q05D60 604 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 SMAD1Q15797 465 aaKnown RBP6.54□□□□□ -1.36
UBR1-208ENST00000569066 CYP1B1Q16678 543 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 C1orf122Q6ZSJ8 110 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 COLGALT2Q8IYK4 626 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 TMEM57Q8N5G2 664 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 WDR60Q8WVS4 1066 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 XAGE5Q8WWM1 108 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 RSC1A1Q92681 617 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 SENP7Q9BQF6 1050 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 ABHD16BQ9H3Z7 469 aa6.54□□□□□ -1.36
UBR1-208ENST00000569066 GAGE12BA1L429 117 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 GAGE12HA6NDE8 117 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 HEXIM1O94992 359 aaKnown RBP6.53□□□□□ -1.36
UBR1-208ENST00000569066 AASDHQ4L235 1098 aaPredicted RBP6.53□□□□□ -1.36
UBR1-208ENST00000569066 SOCS4Q8WXH5 440 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 ASB10Q8WXI3 467 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 CPT1BQ92523 772 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 NUDT22Q9BRQ3 303 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 CCDC134Q9H6E4 229 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 CTIFO43310 598 aaKnown RBP6.53□□□□□ -1.36
UBR1-208ENST00000569066 SPRY2O43597 315 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 MCM5P33992 734 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 EIF4A1P60842 406 aaKnown RBP6.53□□□□□ -1.36
UBR1-208ENST00000569066 TBCCQ15814 346 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 ZNF484Q5JVG2 852 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 C16orf89Q6UX73 402 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 TRABD2AQ86V40 505 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 PRR25Q96S07 402 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 TTPALQ9BTX7 342 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 HERC2P3Q9BVR0 1158 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 DKK2Q9UBU2 259 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 RAB21Q9UL25 225 aa6.53□□□□□ -1.36
UBR1-208ENST00000569066 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.53□□□□□ -1.36
UBR1-208ENST00000569066 LOC105369274A0A096LPK9 316 aa6.52□□□□□ -1.37
UBR1-208ENST00000569066 LOC102723532A0A0G2JNH3 316 aa6.52□□□□□ -1.37
UBR1-208ENST00000569066 MUSKO15146 869 aa6.52□□□□□ -1.37
UBR1-208ENST00000569066 TBX18O95935 607 aa6.52□□□□□ -1.37
UBR1-208ENST00000569066 CHRM2P08172 466 aa6.52□□□□□ -1.37
UBR1-208ENST00000569066 HNRNPA1P09651 372 aaKnown RBP eCLIP6.52□□□□□ -1.37
UBR1-208ENST00000569066 THBS4P35443 961 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms