RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	CACNA2D1	P54289	1103 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	IL9R	Q01113	521 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	ST3GAL1	Q11201	340 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	SF3A1	Q15459	793 aa	Known RBP	12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	FUT11	Q495W5	492 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	PREPL	Q4J6C6	727 aa	Predicted RBP	12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	C6orf118	Q5T5N4	469 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	LAYN	Q6UX15	382 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	VSTM1	Q6UX27	236 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	FMNL3	Q8IVF7	1028 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	CSGALNACT2	Q8N6G5	542 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	ZSWIM2	Q8NEG5	633 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	CADM4	Q8NFZ8	388 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	CXorf38	Q8TB03	319 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	OTUB2	Q96DC9	234 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	SYT15	Q9BQS2	421 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	FOXP1	Q9H334	677 aa	Predicted RBP	12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	GDAP2	Q9NXN4	497 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	SH3BP1	Q9Y3L3	701 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	PIEZO2	Q9H5I5	2752 aa		12.52	□□□□□ -0.41
CLK3-222	ENST00000568232	CAPN8	A6NHC0	703 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	CBX4	O00257	560 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	EPB41L2	O43491	1005 aa	Known RBP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	TRAK2	O60296	914 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	KRT19	P08727	400 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	PDGFRB	P09619	1106 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	KRT10	P13645	584 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	GRK6	P43250	576 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	PPP3CC	P48454	512 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	NOP14	P78316	857 aa	Known RBP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	TLE3	Q04726	772 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	CCDC173	Q0VFZ6	552 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	TARDBP	Q13148	414 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	DHX8	Q14562	1220 aa	Known RBP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	ARSI	Q5FYB1	569 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	KCNT1	Q5JUK3	1230 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	HYI	Q5T013	277 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	DTHD1	Q6ZMT9	781 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	METTL3	Q86U44	580 aa	Known RBP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	TOP6BL	Q8N6T0	577 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	SCFD1	Q8WVM8	642 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	KBTBD7	Q8WVZ9	684 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	BAP1	Q92560	729 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	PCED1B	Q96HM7	432 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	C8orf76	Q96K31	380 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	FIZ1	Q96SL8	496 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	TMEM30A	Q9NV96	361 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	KCND2	Q9NZV8	630 aa		12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.51	□□□□□ -0.41
CLK3-222	ENST00000568232	NEDD8-MDP1	E9PL57	170 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232		H0Y8X5	98 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ERVH48-1	M5A8F1	160 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	IL18RAP	O95256	599 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	TYR	P14679	529 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ADSS	P30520	456 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	TRAPPC10	P48553	1259 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	GTF2B	Q00403	316 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	SRSF1	Q07955	248 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	DNAJC3	Q13217	504 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	LY6D	Q14210	128 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ANKRD1	Q15327	319 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	TDRD10	Q5VZ19	366 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	TPGS1	Q6ZTW0	290 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	USP49	Q70CQ1	688 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	FAM124A	Q86V42	546 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	CACUL1	Q86Y37	369 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	SNIP1	Q8TAD8	396 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	SNX19	Q92543	992 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	SLITRK1	Q96PX8	696 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ZHX3	Q9H4I2	956 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	CCSER2	Q9H7U1	834 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	EHD2	Q9NZN4	543 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	FTSJ1	Q9UET6	329 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	SIX4	Q9UIU6	781 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	CDH9	Q9ULB4	789 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ODF2L	Q9ULJ1	636 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	NOL7	Q9UMY1	257 aa	Known RBP	12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	ANKRD6	Q9Y2G4	727 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	STYXL1	Q9Y6J8	313 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	STON1	Q9Y6Q2	735 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	PTPRQ	Q9UMZ3	2332 aa		12.5	□□□□□ -0.41
CLK3-222	ENST00000568232	MYH11	P35749	1972 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232		B8ZZF3	427 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	CACNG3	O60359	315 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	FAM13A	O94988	1023 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	WISP1	O95388	367 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	HNF1B	P35680	557 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	AFF3	P51826	1226 aa	Known RBP	12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	ZNF131	P52739	623 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	GNL2	Q13823	731 aa	Known RBP	12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	RTP5	Q14D33	572 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	MDH1B	Q5I0G3	518 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	SLFN12L	Q6IEE8	588 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	CENPQ	Q7L2Z9	268 aa	Predicted RBP	12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	GPBP1	Q86WP2	473 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	NT5DC4	Q86YG4	428 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	TMPRSS6	Q8IU80	811 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	SPACA3	Q8IXA5	215 aa		12.49	□□□□□ -0.41
CLK3-222	ENST00000568232	LRRC52	Q8N7C0	313 aa		12.49	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms