RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TMEM232C9JQI7 657 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 MYO1CO00159 1063 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 AKAP10O43572 662 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 TIPRLO75663 272 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 GFPT2O94808 682 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ABHD16AO95870 558 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 SPATA31D3P0C874 917 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 HSPA8P11142 646 aaKnown RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 CAPN3P20807 821 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CSTF2P33240 577 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS35-205ENST00000563984 GUCY1A2P33402 732 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CHKAP35790 457 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ETV1P50549 477 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CYP4A11Q02928 519 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 G3BP1Q13283 466 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS35-205ENST00000563984 NEDD9Q14511 834 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 WDR43Q15061 677 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS35-205ENST00000563984 NOMO1Q15155 1222 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 PTPAQ15257 358 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ATXN7L2Q5T6C5 722 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 SPATA31D4Q6ZUB0 917 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 TOGARAM2Q6ZUX3 1019 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ZER1Q7Z7L7 766 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 MRGPRGQ86SM5 289 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 HOOK3Q86VS8 718 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 PLXDC1Q8IUK5 500 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CCDC83Q8IWF9 413 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 TCEAL8Q8IYN2 117 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 BBOF1Q8ND07 529 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 C3orf20Q8ND61 904 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 IL17REQ8NFR9 667 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 PJA1Q8NG27 643 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS35-205ENST00000563984 SLC35B2Q8TB61 432 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 PROKR1Q8TCW9 393 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 OTUD7AQ8TE49 926 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 TRPC4APQ8TEL6 797 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CDCA5Q96FF9 252 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 C16orf45Q96MC5 204 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 PPM1MQ96MI6 270 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CTAGE1Q96RT6 745 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 SPZ1Q9BXG8 430 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 EDEM3Q9BZQ6 932 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 SENP6Q9GZR1 1112 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 STMN4Q9H169 189 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 TRPV6Q9H1D0 765 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 CLSTN2Q9H4D0 955 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ZNF768Q9H5H4 540 aaKnown RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 GPR108Q9NPR9 543 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 DMRT3Q9NQL9 472 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ZNF277Q9NRM2 450 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 TBC1D22BQ9NU19 505 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 ZNF624Q9P2J8 865 aaPredicted RBP5.47□□□□□ -1.53
VPS35-205ENST00000563984 SH3BGRL2Q9UJC5 107 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 EEA1Q15075 1411 aa5.47□□□□□ -1.53
VPS35-205ENST00000563984 BAZ1BQ9UIG0 1483 aaKnown RBP5.46□□□□□ -1.53
VPS35-205ENST00000563984 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS35-205ENST00000563984 TARSL2A2RTX5 802 aaKnown RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 TMEM200CA6NKL6 621 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 DRGXA6NNA5 263 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 NDUFAB1O14561 156 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 TEX33O43247 280 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 HOXC11O43248 304 aaPredicted RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 XPOTO43592 962 aaKnown RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 CYTH3O43739 400 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 STX6O43752 255 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 KCNJ13O60928 360 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 EPN2O95208 641 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 MBD4O95243 580 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 TGDSO95455 350 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 SERPINC1P01008 464 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 PYGLP06737 847 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 IDO1P14902 403 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 MCM3P25205 808 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 PBLDP30039 288 aaPredicted RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 BMPR1AP36894 532 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FNTAP49354 379 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 MCM2P49736 904 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 PTTG1IPP53801 180 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 HNRNPH2P55795 449 aaKnown RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 C21orf58P58505 322 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 RNASE9P60153 205 aaKnown RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 INAVAQ3KP66 663 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FAM102BQ5T8I3 360 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FAM102AQ5T9C2 384 aaPredicted RBP5.46□□□□□ -1.54
VPS35-205ENST00000563984 TATDN1Q6P1N9 297 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 IKBIPQ70UQ0 350 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 BRINP3Q76B58 766 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 ZNF804AQ7Z570 1209 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 SPATA24Q86W54 205 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 ITPRIPQ8IWB1 547 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 RNF169Q8NCN4 708 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 FBXO30Q8TB52 745 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 CASKIN2Q8WXE0 1202 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 KIF1BPQ96EK5 621 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 COG3Q96JB2 828 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 CNDP1Q96KN2 507 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 MTMR9Q96QG7 549 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 AGAP2Q99490 1192 aa5.46□□□□□ -1.54
VPS35-205ENST00000563984 ALG13Q9NP73 1137 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms