RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 CBFA2T3O75081 653 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 TACC1O75410 805 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 NCAM1P13591 858 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 TUBP50607 506 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 CACNA2D1P54289 1103 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 GRIN1Q05586 938 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 CYP4F3Q08477 520 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 GOLGA8FQ08AF8 430 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 GOLGA8DPQ0D2H9 430 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 C19orf57Q0VDD7 668 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 RHBDD1Q8TEB9 315 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 TOE1Q96GM8 510 aaKnown RBP18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 DUSP9Q99956 384 aaKnown RBP18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 SLC6A17Q9H1V8 727 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 CCSER2Q9H7U1 834 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 PRDM16Q9HAZ2 1276 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 CD93Q9NPY3 652 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.89■□□□□ 0.616e-6■■■■■ 48.1
TSPAN3-208ENST00000560514 OLFML3Q9NRN5 406 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 WDR35Q9P2L0 1181 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 LSM7Q9UK45 103 aaKnown RBP18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 HCN2Q9UL51 889 aa18.89■□□□□ 0.61
TSPAN3-208ENST00000560514 ASXL3Q9C0F0 2248 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 A8MXQ7 604 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 GFRA2O00451 464 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 CLDN5O00501 218 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 CACNG3O60359 315 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 FAM163BP0C2L3 166 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 ZNF883P0CG24 379 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 TYRP14679 529 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 TXLNAP40222 546 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 CASP5P51878 434 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 SUZ12Q15022 739 aaKnown RBP18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 RRAGBQ5VZM2 374 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 TPGS1Q6ZTW0 290 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 WDR49Q8IV35 697 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 B3GALNT2Q8NCR0 500 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 DNASE2BQ8WZ79 361 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 MED10Q9BTT4 135 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 GPR174Q9BXC1 333 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 CACNA2D2Q9NY47 1150 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 NFE2L3Q9Y4A8 694 aa18.88■□□□□ 0.61
TSPAN3-208ENST00000560514 BCAT2O15382 392 aaPredicted RBP18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 FLRT2O43155 660 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 CILPO75339 1184 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 CLSTN1O94985 981 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 DGKGP49619 791 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 PTPRJQ12913 1337 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 WDR72Q3MJ13 1102 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 SNX30Q5VWJ9 437 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 STXBP4Q6ZWJ1 553 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 TRAPPC11Q7Z392 1133 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 ENGASEQ8NFI3 743 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 CADM4Q8NFZ8 388 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 SCAMP5Q8TAC9 235 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 SHROOM3Q8TF72 1996 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 EPSTI1Q96J88 318 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 B3GNT5Q9BYG0 378 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 DPEP3Q9H4B8 488 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 IL21RQ9HBE5 538 aa18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 SETXQ7Z333 2677 aaKnown RBP18.87■□□□□ 0.61
TSPAN3-208ENST00000560514 MYH10P35580 1976 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 TRABD2BA6NFA1 517 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 PRRT4C9JH25 899 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 DLATP10515 647 aaKnown RBP18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 TNNI1P19237 187 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 GJB2P29033 226 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 OXTRP30559 389 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 SLC5A3P53794 718 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 SF3A1Q15459 793 aaKnown RBP18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 DCAF12L1Q5VU92 463 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 DNAJC19Q96DA6 116 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 UBL7Q96S82 380 aaPredicted RBP18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 KCNK16Q96T55 309 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 KIAA1586Q9HCI6 787 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 CD248Q9HCU0 757 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 TMEM30AQ9NV96 361 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 WSB2Q9NYS7 404 aaPredicted RBP18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 GMIPQ9P107 970 aa18.86■□□□□ 0.61
TSPAN3-208ENST00000560514 TLR5O60602 858 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 ATXN1LP0C7T5 689 aaKnown RBP18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 TRPC3Q13507 836 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 HLA-BQ31612 363 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 HTR3DQ70Z44 454 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 METTL3Q86U44 580 aaKnown RBP18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 CBWD2Q8IUF1 395 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 SCUBE3Q8IX30 993 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 ADAM32Q8TC27 787 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 UPF2Q9HAU5 1272 aaKnown RBP18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 DMAP1Q9NPF5 467 aaPredicted RBP18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 PANK4Q9NVE7 773 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 COMMD8Q9NX08 183 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 FNDC3AQ9Y2H6 1198 aaKnown RBP18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 NME7Q9Y5B8 376 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 PCDHGB2Q9Y5G2 931 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 STON1Q9Y6Q2 735 aa18.85■□□□□ 0.61
TSPAN3-208ENST00000560514 A0A087WV48 116 aa18.84■□□□□ 0.61
TSPAN3-208ENST00000560514 WASH3PC4AMC7 463 aa18.84■□□□□ 0.61
TSPAN3-208ENST00000560514 SYNCRIPO60506 623 aaKnown RBP18.84■□□□□ 0.61
TSPAN3-208ENST00000560514 ACADMP11310 421 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms