RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 RNF168Q8IYW5 571 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 VPS52Q8N1B4 723 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 KLHL23Q8NBE8 558 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 ZNF397Q8NF99 534 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 UBA3Q8TBC4 463 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 SLC2A14Q8TDB8 520 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 RIN2Q8WYP3 895 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 MYLPFQ96A32 169 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 CYFIP2Q96F07 1278 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 TMEM176AQ96HP8 235 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 MEGF10Q96KG7 1140 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 HEXIM2Q96MH2 286 aaKnown RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 TSPAN18Q96SJ8 248 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 RAD9AQ99638 391 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 AGPAT1Q99943 283 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 TMEM175Q9BSA9 504 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 HERC2P3Q9BVR0 1158 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 SSBP4Q9BWG4 385 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 B3GNT5Q9BYG0 378 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 CEP41Q9BYV8 373 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 EDEM3Q9BZQ6 932 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 ZNF518BQ9C0D4 1074 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 NHEJ1Q9H9Q4 299 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 CYP3A43Q9HB55 503 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 GTF3C4Q9UKN8 822 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 BARX2Q9UMQ3 279 aaPredicted RBP5.53□□□□□ -1.52
SPG11-220ENST00000559933 NENFQ9UMX5 172 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 CNTN6Q9UQ52 1028 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 STXBP5LQ9Y2K9 1186 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 PLXNA3P51805 1871 aa5.53□□□□□ -1.52
SPG11-220ENST00000559933 EYSQ5T1H1 3165 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 HIDE1A8MVS5 230 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 GABRDO14764 452 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 FSCN2O14926 492 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 GRM6O15303 877 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CYP11A1P05108 521 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 SPATA31D3P0C874 917 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PTPN1P18031 435 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 HNRNPH3P31942 346 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 PRKCIP41743 596 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ARL4DP49703 201 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ERVFC1P60507 584 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 NOMO3P69849 1222 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 RBM10P98175 930 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 CDR2Q01850 454 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 TAP1Q03518 808 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 YWHAHQ04917 246 aaPredicted RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 CAMK1Q14012 370 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PSMD5Q16401 504 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PTPROQ16827 1216 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PTPN20Q4JDL3 420 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CTXN3Q4LDR2 81 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CYP4A22Q5TCH4 519 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CYP26C1Q6V0L0 522 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 SPATA31D4Q6ZUB0 917 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ACAD11Q709F0 780 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ENOSF1Q7L5Y1 443 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 GPRIN1Q7Z2K8 1008 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CPNE8Q86YQ8 564 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 WDTC1Q8N5D0 677 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 B3GALNT2Q8NCR0 500 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PHOSPHO2Q8TCD6 241 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CLEC4CQ8WTT0 213 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 POF1BQ8WVV4 589 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ZNF606Q8WXB4 792 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CPA5Q8WXQ8 436 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ARNTL2Q8WYA1 636 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 NDRG1Q92597 394 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 SYN2Q92777 582 aaPredicted RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 SECISBP2LQ93073 1101 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 ARHGEF26Q96DR7 871 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 TMEM169Q96HH4 297 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PCED1BQ96HM7 432 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PIWIL1Q96J94 861 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 PKMYT1Q99640 499 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 C11orf70Q9BRQ4 267 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 MED10Q9BTT4 135 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 TTPALQ9BTX7 342 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 COLEC11Q9BWP8 271 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 NT5C1AQ9BXI3 368 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ZBP1Q9H171 429 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 MTIF3Q9H2K0 278 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 DEF6Q9H4E7 631 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 KRT82Q9NSB4 513 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ZNHIT6Q9NWK9 470 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 TRMT1Q9NXH9 659 aaKnown RBP5.52□□□□□ -1.53
SPG11-220ENST00000559933 SPG21Q9NZD8 308 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 ADAMTS1Q9UHI8 967 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 TSPAN16Q9UKR8 245 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.52□□□□□ -1.53
SPG11-220ENST00000559933 INSL6Q9Y581 213 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 CDY1Q9Y6F8 540 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PTPRDP23468 1912 aa5.52□□□□□ -1.53
SPG11-220ENST00000559933 PATJQ8NI35 1801 aa5.51□□□□□ -1.53
SPG11-220ENST00000559933 WDR27A2RRH5 827 aa5.51□□□□□ -1.53
SPG11-220ENST00000559933 MTMR11A4FU01 709 aa5.51□□□□□ -1.53
SPG11-220ENST00000559933 H3BRJ5 948 aa5.51□□□□□ -1.53
SPG11-220ENST00000559933 PDE2AO00408 941 aaPredicted RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms