RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 KRT81Q14533 505 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 CA9Q16790 459 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 ZC3H12AQ5D1E8 599 aaKnown RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 OTUD1Q5VV17 481 aaPredicted RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 HFE2Q6ZVN8 426 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 TMC3Q7Z5M5 1100 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 RFX6Q8HWS3 928 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 SPATA2LQ8IUW3 424 aaPredicted RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 PSTKQ8IV42 348 aaKnown RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 DCP1BQ8IZD4 617 aaKnown RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 ALLCQ8N6M5 410 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 CCDC89Q8N998 374 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 ACTL9Q8TC94 416 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 ZNF670Q9BS34 389 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 MAK16Q9BXY0 300 aaKnown RBP13.23□□□□□ -0.29
USP3-213ENST00000559711 MED4Q9NPJ6 270 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 MARCH5Q9NX47 278 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 RRN3Q9NYV6 651 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 CALCOCO1Q9P1Z2 691 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 STAP1Q9ULZ2 295 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 ZNF148Q9UQR1 794 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 FAN1Q9Y2M0 1017 aa13.23□□□□□ -0.29
USP3-213ENST00000559711 TDRD15B5MCY1 1934 aaKnown RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 GOLGA6BA6NDN3 693 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 TBKBP1A7MCY6 615 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 H3BQF6 201 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 PPFIA2O75334 1257 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 LTFP02788 710 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 GALTP07902 379 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 USP17L7P0C7H9 530 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 FGFR3P22607 806 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 RFC2P35250 354 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 SULT1E1P49888 294 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 DYNLT1P63172 113 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 OTUD4Q01804 1114 aaKnown RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 PKN2Q16513 984 aaKnown RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 NFE2Q16621 373 aaPredicted RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 SPDYCQ5MJ68 293 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 VARS2Q5ST30 1063 aaKnown RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 SYPL2Q5VXT5 272 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 CNKSR3Q6P9H4 555 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 ZNF365Q70YC5 407 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 BEND5Q7L4P6 421 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 DEFB128Q7Z7B8 93 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 CCHCR1Q8TD31 782 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 PIK3R5Q8WYR1 880 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 PGAP3Q96FM1 320 aaPredicted RBP13.22□□□□□ -0.29
USP3-213ENST00000559711 SNF8Q96H20 258 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 FUBP3Q96I24 572 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP3-213ENST00000559711 GPR62Q9BZJ7 368 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 TMEM39AQ9NV64 488 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 GPATCH2LQ9NWQ4 482 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 MTMR10Q9NXD2 777 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 ASIC3Q9UHC3 531 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 ATP11BQ9Y2G3 1177 aa13.22□□□□□ -0.29
USP3-213ENST00000559711 OR6C75A6NL08 312 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 TNFRSF10BO14763 440 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 KRT14P02533 472 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 CLTBP09497 229 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 ATF2P15336 505 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 RDXP35241 583 aaKnown RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 GGCXP38435 758 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 PITX1P78337 314 aaPredicted RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 CBX1P83916 185 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 CAV1Q03135 178 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 DHX9Q08211 1270 aaKnown RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 ELAVL2Q12926 359 aaKnown RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 CALCOCO2Q13137 446 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 MTMR3Q13615 1198 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 IKBKEQ14164 716 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 SLC39A12Q504Y0 691 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 ANKRD20A8PQ5CZ79 823 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 FAM171A1Q5VUB5 890 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 SLC9A4Q6AI14 798 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 RHBDF2Q6PJF5 856 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 GSTA5Q7RTV2 222 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 PQLC3Q8N755 202 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 HAUS1Q96CS2 278 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 SLC9A7Q96T83 725 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 SAE1Q9UBE0 346 aaPredicted RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 MTRF1LQ9UGC7 380 aaKnown RBP13.21□□□□□ -0.29
USP3-213ENST00000559711 FZD10Q9ULW2 581 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 AP4E1Q9UPM8 1137 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 NAALADL1Q9UQQ1 740 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 SF3B1O75533 1304 aaKnown RBP eCLIP13.21□□□□□ -0.297e-8■■■■■ 30.2
USP3-213ENST00000559711 TSC2P49815 1807 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 TTC3P53804 2025 aa13.21□□□□□ -0.29
USP3-213ENST00000559711 M0QYT0 321 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 CAPN9O14815 690 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 TBC1D4O60343 1298 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 SYF2O95926 243 aaKnown RBP13.21□□□□□ -0.3
USP3-213ENST00000559711 OR4Q2P0C623 313 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 HSPA8P11142 646 aaKnown RBP13.21□□□□□ -0.3
USP3-213ENST00000559711 CYP2F1P24903 491 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 HSD17B3P37058 310 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 ADCY8P40145 1251 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 NOMO1Q15155 1222 aa13.21□□□□□ -0.3
USP3-213ENST00000559711 TRIP13Q15645 432 aaPredicted RBP13.21□□□□□ -0.3
USP3-213ENST00000559711 UAP1Q16222 522 aaPredicted RBP13.21□□□□□ -0.3
USP3-213ENST00000559711 CFAP58Q5T655 872 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms