RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 LGMNQ99538 433 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 SHANK3Q9BYB0 1731 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 RPS6KL1Q9Y6S9 549 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 DGKIO75912 1065 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 ADIGQ0VDE8 80 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 PCSK7Q16549 785 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 BOLA3Q53S33 107 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 EFHC2Q5JST6 749 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 ATG16L1Q676U5 607 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 VSTM1Q6UX27 236 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 ANKS1BQ7Z6G8 1248 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 POU5F2Q8N7G0 328 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 TEKT4Q8WW24 435 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 L3MBTL3Q96JM7 780 aaPredicted RBP15.4■□□□□ 0.06
CUX1-215ENST00000556210 ATXN3LQ9H3M9 355 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 SLC5A4Q9NY91 659 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 MSCO60682 206 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 STIP1P31948 543 aaKnown RBP15.4■□□□□ 0.06
CUX1-215ENST00000556210 MLH1P40692 756 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 CDKN2BP42772 138 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 RIPK1Q13546 671 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 B3GNT9Q6UX72 402 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 RASSF3Q86WH2 238 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 FBXL18Q96ME1 805 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 MRPL45Q9BRJ2 306 aaKnown RBP15.4■□□□□ 0.06
CUX1-215ENST00000556210 ZNF518BQ9C0D4 1074 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 ADARB2Q9NS39 739 aaKnown RBP15.4■□□□□ 0.06
CUX1-215ENST00000556210 DDIT4Q9NX09 232 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 PACSIN3Q9UKS6 424 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 SLC12A4Q9UP95 1085 aa15.4■□□□□ 0.06
CUX1-215ENST00000556210 NFASCO94856 1347 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 PDHXO00330 501 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 LMNAP02545 664 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 KCNA3P22001 575 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 POLNQ7Z5Q5 900 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 CDKL3Q8IVW4 592 aaPredicted RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 SHOC2Q9UQ13 582 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 DDX60LQ5H9U9 1706 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 FAM237BA0A1B0GVD1 139 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 CASTOR2A6NHX0 329 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 ENTPD5O75356 428 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 RECQL4O94761 1208 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 HMBSP08397 361 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 STX3Q13277 289 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 TAF12Q16514 161 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 TRABD2AQ86V40 505 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 CD101Q93033 1021 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 E2F7Q96AV8 911 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 PIWIL1Q96J94 861 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 SNRNP25Q9BV90 132 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 NXF3Q9H4D5 531 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 TMEM134Q9H6X4 195 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 AAASQ9NRG9 546 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 WDR27A2RRH5 827 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 UNC5CO95185 931 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 AVPR1AP37288 418 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 TPI1P60174 286 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 MRPS35P82673 323 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 GBE1Q04446 702 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 ASPHQ12797 758 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 ZNF268Q14587 947 aaPredicted RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 PDZD4Q76G19 769 aaPredicted RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 CLEC4CQ8WTT0 213 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 MAGEB5Q9BZ81 275 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 TUBGCP4Q9UGJ1 667 aa15.39■□□□□ 0.05
CUX1-215ENST00000556210 APOBEC2Q9Y235 224 aaKnown RBP15.39■□□□□ 0.05
CUX1-215ENST00000556210 CYB561D2O14569 222 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 TAC1P20366 129 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 AQP5P55064 265 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 RCN1Q15293 331 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 PMF1Q6P1K2 205 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 CPT1BQ92523 772 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 STRA6Q9BX79 667 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 TMEM120AQ9BXJ8 343 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 BFARQ9NZS9 450 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 STAP1Q9ULZ2 295 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 SNCAIPQ9Y6H5 919 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 WDR4P57081 412 aaKnown RBP15.38■□□□□ 0.05
CUX1-215ENST00000556210 BNIP1Q12981 228 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 DGKDQ16760 1214 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GNASQ5JWF2 1037 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 THEMIS2Q5TEJ8 643 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 PYROXD2Q8N2H3 581 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 SLC26A7Q8TE54 656 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 PCYT2Q99447 389 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 CPSF3Q9UKF6 684 aaKnown RBP15.38■□□□□ 0.05
CUX1-215ENST00000556210 DOCK2Q92608 1830 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GOLGA8QA0A0J9YX86 632 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GOLGA8OA6NCC3 632 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GOLGA8NF8WBI6 632 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 PPEF2O14830 753 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GRIN3BO60391 1043 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GNAT1P11488 350 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 MSS51Q4VC12 460 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 ECHDC2Q86YB7 292 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 DEFB106AQ8N104 65 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 GPC2Q8N158 579 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 EFCAB3Q8N7B9 438 aa15.38■□□□□ 0.05
CUX1-215ENST00000556210 SRPK1Q96SB4 655 aaKnown RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms