RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 MAD1L1Q9Y6D9 718 aa16.43■□□□□ 0.22
LDLR-204ENST00000545707 CHADO15335 359 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 ZBED1O96006 694 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 PFKMP08237 780 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 CSH1P0DML2 217 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 CSH2P0DML3 217 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 TGFB3P10600 412 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 ATXN1P54253 815 aaKnown RBP16.42■□□□□ 0.22
LDLR-204ENST00000545707 BST1Q10588 318 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 VGLL4Q14135 290 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 CELF3Q5SZQ8 465 aaKnown RBP16.42■□□□□ 0.22
LDLR-204ENST00000545707 GJC2Q5T442 439 aaPredicted RBP16.42■□□□□ 0.22
LDLR-204ENST00000545707 MROH9Q5TGP6 573 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 CAPRIN2Q6IMN6 1127 aaKnown RBP16.42■□□□□ 0.22
LDLR-204ENST00000545707 B3GNT5Q9BYG0 378 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 C20orf27Q9GZN8 174 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 DCLRE1BQ9H816 532 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 IFT122Q9HBG6 1241 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 PDGFCQ9NRA1 345 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 RNF19AQ9NV58 838 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 TNFSF13BQ9Y275 285 aa16.42■□□□□ 0.22
LDLR-204ENST00000545707 TNS1Q9HBL0 1735 aaKnown RBP16.42■□□□□ 0.22
LDLR-204ENST00000545707 A0A087WZ62 844 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 RFPL1O75677 317 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 VDRP11473 427 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 TMPRSS15P98073 1019 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 TFDP2Q14188 446 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 CCDC6Q16204 474 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 SLC10A6Q3KNW5 377 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 SPDYAQ5MJ70 313 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 PMF1Q6P1K2 205 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 ZCCHC23Q6ZST2 131 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 TREML1Q86YW5 311 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 ARID3BQ8IVW6 561 aaPredicted RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.41■□□□□ 0.22
LDLR-204ENST00000545707 UNC5BQ8IZJ1 945 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 NETO2Q8NC67 525 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 FBXO41Q8TF61 875 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 FAM172AQ8WUF8 416 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 NRG4Q8WWG1 115 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 FDXACB1Q9BRP7 624 aaPredicted RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 ETNK2Q9NVF9 386 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 PAK5Q9P286 719 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 SMAPO00193 183 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 USP2O75604 605 aaPredicted RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 IL18RAPO95256 599 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 METTL18O95568 372 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 SNRPAP09012 282 aaKnown RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 TSHRP16473 764 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 OSBPP22059 807 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 TUBP50607 506 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 CHI3L2Q15782 390 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 MIS12Q9H081 205 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 PCDH18Q9HCL0 1135 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 FAM49BQ9NUQ9 324 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 PCMTD2Q9NV79 361 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 PIH1D1Q9NWS0 290 aaKnown RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 PLLPQ9Y342 182 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.41■□□□□ 0.22
LDLR-204ENST00000545707 SSC5DA1L4H1 1573 aa16.41■□□□□ 0.22
LDLR-204ENST00000545707 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 TGDSO95455 350 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 ENO1P06733 434 aaKnown RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 ACAP1Q15027 740 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 MUM1Q2TAK8 710 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 FAM47CQ5HY64 1035 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 WDR78Q5VTH9 848 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 UNC5AQ6ZN44 842 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 ILDR2Q71H61 639 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.4■□□□□ 0.222e-7■□□□□ 10.3
LDLR-204ENST00000545707 DNAJC9Q8WXX5 260 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 SNRNP25Q9BV90 132 aaKnown RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 ARHGEF4Q9NR80 690 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 NMRK1Q9NWW6 199 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 SLC17A6Q9P2U8 582 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 SLC15A5A6NIM6 579 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 APOL1O14791 398 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 DNAJC6O75061 913 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 LGR5O75473 907 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 KRT37O76014 449 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 VTNP04004 478 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 ATP6V1C1P21283 382 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 GBE1Q04446 702 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 RCN2Q14257 317 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 GOLGA7BQ2TAP0 167 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 PPP1R26Q5T8A7 1209 aaPredicted RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 CCDC62Q6P9F0 684 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 APOBEC3FQ8IUX4 373 aaKnown RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 FGD4Q96M96 766 aa16.4■□□□□ 0.22
LDLR-204ENST00000545707 PPARGC1AQ9UBK2 798 aaKnown RBP16.4■□□□□ 0.22
LDLR-204ENST00000545707 HMX2A2RU54 273 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 B2RBV5 119 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 E7ENQ6 273 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 H3BRJ5 948 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 CAPN9O14815 690 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 TBX10O75333 385 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 PEX19P40855 299 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 SLC10A2Q12908 348 aaPredicted RBP16.39■□□□□ 0.21
LDLR-204ENST00000545707 SH3D19Q5HYK7 790 aa16.39■□□□□ 0.21
LDLR-204ENST00000545707 SNX30Q5VWJ9 437 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms