RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 SLCO1B3Q9NPD5 702 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 UBQLN1Q9UMX0 589 aaKnown RBP18.75■□□□□ 0.59
VIM-209ENST00000544301 CLEC11AQ9Y240 323 aa18.75■□□□□ 0.59
VIM-209ENST00000544301 MBLAC1A4D2B0 266 aaPredicted RBP18.74■□□□□ 0.59
VIM-209ENST00000544301 CFAP73A6NFT4 308 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 KBTBD13C9JR72 458 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 PIRO00625 290 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 AVILO75366 819 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 PDGFRBP09619 1106 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 CCDC130P13994 396 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 PTPN9P43378 593 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 BST2Q10589 180 aaKnown RBP18.74■□□□□ 0.59
VIM-209ENST00000544301 AGGF1Q8N302 714 aaeCLIP18.74■□□□□ 0.59
VIM-209ENST00000544301 ANKRD52Q8NB46 1076 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 TCRBV9S1A1TA0A576 114 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 ZNF487B1APH4 448 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 SPTLC1O15269 473 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 MGRN1O60291 552 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 EDF1O60869 148 aaKnown RBP18.74■□□□□ 0.59
VIM-209ENST00000544301 MAP3K6O95382 1288 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 ZBED1O96006 694 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 ADORA2BP29275 332 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 HIC1Q14526 733 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 FAM110CQ1W6H9 321 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 PPP6R3Q5H9R7 873 aaPredicted RBP18.74■□□□□ 0.59
VIM-209ENST00000544301 FBXO47Q5MNV8 452 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 PRAMEF19Q5SWL8 479 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 SLC26A9Q7LBE3 791 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 CRYBG2Q8N1P7 616 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 CENPIQ92674 756 aaPredicted RBP18.74■□□□□ 0.59
VIM-209ENST00000544301 NRDE2Q9H7Z3 1164 aa18.74■□□□□ 0.59
VIM-209ENST00000544301 SMIM28A0A1B0GU29 152 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 IQCA1LA6NCM1 817 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 CYP2F1P24903 491 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 LMO2P25791 158 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 L1CAMP32004 1257 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 GNL1P36915 607 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 BCAT1P54687 386 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 YWHAGP61981 247 aaKnown RBP eCLIP18.73■□□□□ 0.59
VIM-209ENST00000544301 SNCBQ16143 134 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 TBC1D1Q86TI0 1168 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 PNMA8AQ86V59 439 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 BANPQ8N9N5 519 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 PARK7Q99497 189 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 PTPN18Q99952 460 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 KLK14Q9P0G3 267 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 SLC15A5A6NIM6 579 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 KPNA7A9QM74 516 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 SPAG6O75602 509 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 CD4P01730 458 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 LCP1P13796 627 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 AXLP30530 894 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 RPL34P49207 117 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 ATXN1P54253 815 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 YWHAZP63104 245 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 ZNF200P98182 395 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 CCDC15Q0P6D6 951 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 DPYSL2Q16555 572 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 KBTBD12Q3ZCT8 623 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 ANKLE1Q8NAG6 615 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 LRRN4Q8WUT4 740 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 TMEM40Q8WWA1 233 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 DNAJB3Q8WWF6 145 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 SLC44A1Q8WWI5 657 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 ZNF75CPQ92670 426 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 ALKBH8Q96BT7 664 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 FRMD8Q9BZ67 464 aaPredicted RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 ETNK2Q9NVF9 386 aa18.73■□□□□ 0.59
VIM-209ENST00000544301 GNEQ9Y223 722 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 PIN4Q9Y237 131 aaKnown RBP18.73■□□□□ 0.59
VIM-209ENST00000544301 SCN4AP35499 1836 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 GOLGA8RI6L899 631 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 SCNN1AP37088 669 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 MAGEA6P43360 314 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 ZNF618Q5T7W0 954 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 FAXCQ5TGI0 409 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 ARCQ7LC44 396 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 TCP10LQ8TDR4 215 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 THOC1Q96FV9 657 aaKnown RBP18.72■□□□□ 0.59
VIM-209ENST00000544301 KLF6Q99612 283 aaPredicted RBP18.72■□□□□ 0.59
VIM-209ENST00000544301 KLC2Q9H0B6 622 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 DHX35Q9H5Z1 703 aaKnown RBP18.72■□□□□ 0.59
VIM-209ENST00000544301 PNPLA8Q9NP80 782 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 GDAP2Q9NXN4 497 aa18.72■□□□□ 0.59
VIM-209ENST00000544301 PDCD11Q14690 1871 aaKnown RBP18.72■□□□□ 0.59
VIM-209ENST00000544301 TM9SF1O15321 606 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 ADRA1DP25100 572 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 ADAM17P78536 824 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 PTK7Q13308 1070 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 MFSD10Q14728 455 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CAND1Q86VP6 1230 aaKnown RBP18.71■□□□□ 0.59
VIM-209ENST00000544301 FAM228AQ86W67 206 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CCDC110Q8TBZ0 833 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 MAGEB5Q9BZ81 275 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 RNF39Q9H2S5 420 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 SNX25Q9H3E2 840 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 CD248Q9HCU0 757 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 MTMR10Q9NXD2 777 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 IQANK1A0A1B0GTG1 560 aa18.71■□□□□ 0.59
VIM-209ENST00000544301 HGSO14964 777 aaPredicted RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms