RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 HIST1H2AAQ96QV6 131 aa4.7□□□□□ -1.66
PRKDC-210ENST00000541488 TMEM184CQ9NVA4 438 aa4.7□□□□□ -1.66
PRKDC-210ENST00000541488 PAXBP1Q9Y5B6 917 aa4.7□□□□□ -1.66
PRKDC-210ENST00000541488 BTBD19C9JJ37 291 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 F8W8V4 182 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 CLIC1O00299 241 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 GOLIM4O00461 696 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 FYB1O15117 783 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 FRS3O43559 492 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 TMPRSS11DO60235 418 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 A1BGP04217 495 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 BTF3P20290 206 aaKnown RBP4.69□□□□□ -1.66
PRKDC-210ENST00000541488 NR4A2P43354 598 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 CCT4P50991 539 aaKnown RBP4.69□□□□□ -1.66
PRKDC-210ENST00000541488 TIAL1Q01085 375 aaKnown RBP eCLIP4.69□□□□□ -1.66
PRKDC-210ENST00000541488 SLC14A1Q13336 389 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 DENND2CQ68D51 928 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 PLAG1Q6DJT9 500 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 RANBP10Q6VN20 620 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 USP49Q70CQ1 688 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 TECPR1Q7Z6L1 1165 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 P3H2Q8IVL5 708 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 C16orf71Q8IYS4 520 aaPredicted RBP4.69□□□□□ -1.66
PRKDC-210ENST00000541488 CUL5Q93034 780 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 MTMR4Q9NYA4 1195 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 NKX1-2Q9UD57 310 aaPredicted RBP4.69□□□□□ -1.66
PRKDC-210ENST00000541488 ZNF212Q9UDV6 495 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 VPS4AQ9UN37 437 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 CORO2BQ9UQ03 480 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 HPSEQ9Y251 543 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 SNX13Q9Y5W8 968 aa4.69□□□□□ -1.66
PRKDC-210ENST00000541488 PHKG2P15735 406 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 YPEL5P62699 121 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 RBMS2Q15434 407 aaKnown RBP4.68□□□□□ -1.66
PRKDC-210ENST00000541488 TMTC4Q5T4D3 741 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 MEX3CQ5U5Q3 659 aaKnown RBP4.68□□□□□ -1.66
PRKDC-210ENST00000541488 FSTL5Q8N475 847 aaPredicted RBP4.68□□□□□ -1.66
PRKDC-210ENST00000541488 TIFAQ96CG3 184 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 PRR11Q96HE9 360 aaPredicted RBP4.68□□□□□ -1.66
PRKDC-210ENST00000541488 SNX22Q96L94 193 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 SLC27A6Q9Y2P4 619 aa4.68□□□□□ -1.66
PRKDC-210ENST00000541488 AQP7P3A6NL99 342 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 CYSRT1A8MQ03 144 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 SNX2O60749 519 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 PRAMEF2O60811 474 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 ZBED1O96006 694 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 MT-ND5P03915 603 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 ATF7P17544 494 aaPredicted RBP4.67□□□□□ -1.66
PRKDC-210ENST00000541488 ATF3P18847 181 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 EIF4A1P60842 406 aaKnown RBP4.67□□□□□ -1.66
PRKDC-210ENST00000541488 FAM193AP78312 1265 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 FHL1Q13642 323 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 GALEQ14376 348 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 KPNB1Q14974 876 aaKnown RBP4.67□□□□□ -1.66
PRKDC-210ENST00000541488 TRIM71Q2Q1W2 868 aaKnown RBP4.67□□□□□ -1.66
PRKDC-210ENST00000541488 GFOD2Q3B7J2 385 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 AWAT2Q6E213 333 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 LINC01465Q8N7H1 131 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 C12orf76Q8N812 135 aaPredicted RBP4.67□□□□□ -1.66
PRKDC-210ENST00000541488 HMCESQ96FZ2 354 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 OBP2AQ9NY56 170 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 DNAJB11Q9UBS4 358 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 DKK4Q9UBT3 224 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 STEAP1Q9UHE8 339 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 SHROOM4Q9ULL8 1493 aa4.67□□□□□ -1.66
PRKDC-210ENST00000541488 GOLGA6CA6NDK9 693 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 GOLGA6BA6NDN3 693 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 M0R3H8 397 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 SOCS2O14508 198 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 FGBP02675 491 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 GOLGA6DP0CG33 693 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 PRF1P14222 555 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 CD19P15391 556 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 CFHR3Q02985 330 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 MANEALQ5VSG8 457 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 GRHL2Q6ISB3 625 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 VSTM1Q6UX27 236 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 CHST15Q7LFX5 561 aaPredicted RBP4.66□□□□□ -1.66
PRKDC-210ENST00000541488 IRF2BP2Q7Z5L9 587 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 SRGAP1Q7Z6B7 1085 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 LIX1LQ8IVB5 337 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 TTC8Q8TAM2 541 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 EDC3Q96F86 508 aaKnown RBP4.66□□□□□ -1.66
PRKDC-210ENST00000541488 LRRC46Q96FV0 321 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 VPS50Q96JG6 964 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 DHX36Q9H2U1 1008 aaKnown RBP4.66□□□□□ -1.66
PRKDC-210ENST00000541488 FOXP1Q9H334 677 aaPredicted RBP4.66□□□□□ -1.66
PRKDC-210ENST00000541488 GOLGA6AQ9NYA3 693 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 PI4KBQ9UBF8 816 aa4.66□□□□□ -1.66
PRKDC-210ENST00000541488 NTN1O95631 604 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 TMEM225BP0DP42 221 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 RHCEP18577 417 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 ADRA1DP25100 572 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 RBL1P28749 1068 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 GPC5P78333 572 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 TXNL4AP83876 142 aaKnown RBP4.65□□□□□ -1.67
PRKDC-210ENST00000541488 RHDQ02161 417 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 SEMA5AQ13591 1074 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 KLHDC7AQ5VTJ3 777 aa4.65□□□□□ -1.67
PRKDC-210ENST00000541488 RNF44Q7L0R7 432 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms