RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ZMYND8Q9ULU4 1186 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 AP4E1Q9UPM8 1137 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 USP15Q9Y4E8 981 aaPredicted RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 IPPQ9Y573 584 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 RAD54BQ9Y620 910 aa6.9□□□□□ -1.3
USP28-206ENST00000538224 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.9□□□□□ -1.3
USP28-206ENST00000538224 CCT8L1PA6NM43 557 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 POC1B-GALNT4F8VUJ3 575 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PPEF2O14830 753 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 KCNN4O15554 427 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SNX3O60493 162 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 TMEM63AO94886 807 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 OAS1P00973 400 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 IGHA2P01877 340 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 INHBAP08476 426 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 FAM200BP0CF97 657 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SKIP12755 728 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 CCDC130P13994 396 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 CA4P22748 312 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 AKAP5P24588 427 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 CYP2F1P24903 491 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PCSK1P29120 753 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ADORA2BP29275 332 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 RPL9P32969 192 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 NOS2P35228 1153 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 FDFT1P37268 417 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 MATKP42679 507 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 MSH2P43246 934 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SULT1E1P49888 294 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 LIG3P49916 1009 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ZNF157P51786 506 aaPredicted RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 GDF10P55107 478 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 HDAC4P56524 1084 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 GJA9P57773 515 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 LILRA4P59901 499 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 KCNJ11Q14654 390 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SLC25A52Q3SY17 297 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 BBS9Q3SYG4 887 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SLC45A4Q5BKX6 768 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 GLRA4Q5JXX5 417 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 LGSNQ5TDP6 509 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 MFSD14CQ5VZR4 134 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 NUGGCQ68CJ6 796 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 HEATR6Q6AI08 1181 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 TRNP1Q6NT89 227 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ADGRD1Q6QNK2 874 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SPATA21Q7Z572 469 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 RPAINQ86UA6 219 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ZC3H18Q86VM9 953 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 FAM228AQ86W67 206 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 UNC45BQ8IWX7 931 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SIX6OS1Q8N1H7 587 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ANKRD42Q8N9B4 389 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 SLC2A14Q8TDB8 520 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 LRRC8CQ8TDW0 803 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PWWP2AQ96N64 755 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PPP1R10Q96QC0 940 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 SLC9A7Q96T83 725 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PAFAH2Q99487 392 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 DHRS4Q9BTZ2 278 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 DUSP16Q9BY84 665 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 UPF3AQ9H1J1 476 aaKnown RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 NRDE2Q9H7Z3 1164 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 LRRC4Q9HBW1 653 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 RAB6BQ9NRW1 208 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 TBK1Q9UHD2 729 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 RABGEF1Q9UJ41 708 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ZNF180Q9UJW8 692 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 GIT1Q9Y2X7 761 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 ARL2BPQ9Y2Y0 163 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 HES2Q9Y543 173 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PTCH2Q9Y6C5 1203 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 COL4A4P53420 1690 aaPredicted RBP6.89□□□□□ -1.31
USP28-206ENST00000538224 MYO16Q9Y6X6 1858 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 PTPRDP23468 1912 aa6.89□□□□□ -1.31
USP28-206ENST00000538224 CFAP73A6NFT4 308 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 TCP11X1B4DZS4 312 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 C9IYK1 514 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 GOLGA8MH3BSY2 632 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 IGF2BP3O00425 579 aaKnown RBP eCLIP6.88□□□□□ -1.31
USP28-206ENST00000538224 PIK3R2O00459 728 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 CYB561D2O14569 222 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 TRDMT1O14717 391 aaKnown RBP6.88□□□□□ -1.31
USP28-206ENST00000538224 PPP1R12AO14974 1030 aaPredicted RBP6.88□□□□□ -1.31
USP28-206ENST00000538224 TRIM66O15016 1216 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 GPR182O15218 404 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 OPHN1O60890 802 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 GCATO75600 419 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 GRAP2O75791 330 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 DNAJC8O75937 253 aaPredicted RBP6.88□□□□□ -1.31
USP28-206ENST00000538224 FAM155BO75949 473 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 ASMTLO95671 621 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 THP07101 528 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 SLC10A3P09131 477 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 C6orf222P0C671 652 aaPredicted RBP6.88□□□□□ -1.31
USP28-206ENST00000538224 FGFR1P11362 822 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 MLNP12872 115 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 ALADP13716 330 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 LCP1P13796 627 aa6.88□□□□□ -1.31
USP28-206ENST00000538224 PTPN1P18031 435 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms