RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 SLC6A3Q01959 620 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 PMF1Q6P1K2 205 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 OLFML1Q6UWY5 402 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 MCUQ8NE86 351 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 PCDH19Q8TAB3 1148 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 ZNF670Q9BS34 389 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 SLC4A5Q9BY07 1137 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 KCNK13Q9HB14 408 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 PCDH18Q9HCL0 1135 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 BATF3Q9NR55 127 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 DLDP09622 509 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 SETSIPP0DME0 302 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 NEFHP12036 1026 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 CLNS1AP54105 237 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 CRYMQ14894 314 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 PKDCCQ504Y2 493 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 SYCP2LQ5T4T6 812 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 PRPF39Q86UA1 669 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 CAND1Q86VP6 1230 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 FAM172AQ8WUF8 416 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 DCPSQ96C86 337 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 IQCGQ9H095 443 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 NGRNQ9NPE2 291 aaKnown RBP16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 ETNK2Q9NVF9 386 aa16.66■□□□□ 0.26
CHMP1A-202ENST00000535997 COPEO14579 308 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 TOMM70O94826 608 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 LGALS2P05162 132 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 APRTP07741 180 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 OSBPP22059 807 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 EPHB2P29323 1055 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SERPINB4P48594 390 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 ARHGAP1Q07960 439 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 GOLGA7BQ2TAP0 167 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 ANKRD20A2Q5SQ80 823 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 PPP1R26Q5T8A7 1209 aaPredicted RBP16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 ANKRD20A1Q5TYW2 823 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 ANKRD20A3Q5VUR7 823 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 ZDHHC17Q8IUH5 632 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SULF1Q8IWU6 871 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 CTAGE3PQ8IX95 158 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 PPM1NQ8N819 430 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 STK32AQ8WU08 396 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SLC35F5Q8WV83 523 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 KHSRPQ92945 711 aaKnown RBP eCLIP16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 TTC17Q96AE7 1141 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SRPK1Q96SB4 655 aaKnown RBP16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 POPDC2Q9HBU9 364 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SLC5A4Q9NY91 659 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 TTLL3Q9Y4R7 772 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 NUMBLQ9Y6R0 609 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 VTNP04004 478 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 RGS7P49802 495 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 SCUBE3Q8IX30 993 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 FBXO41Q8TF61 875 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 CFAP36Q96G28 342 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 NSL1Q96IY1 281 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 KCNH4Q9UQ05 1017 aa16.65■□□□□ 0.26
CHMP1A-202ENST00000535997 TRIM49D1C9J1S8 452 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 PEX11AO75192 247 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 GNAZP19086 355 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 BGNP21810 368 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 CDK16Q00536 496 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 SESTD1Q86VW0 696 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 TRIM42Q8IWZ5 723 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 ANKRD13AQ8IZ07 590 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 ENDOVQ8N8Q3 282 aaKnown RBP16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 KIF12Q96FN5 646 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 PPP1R16BQ96T49 567 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 BTBD10Q9BSF8 475 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 PLLPQ9Y342 182 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 COL1A2P08123 1366 aa16.64■□□□□ 0.25
CHMP1A-202ENST00000535997 SLC15A5A6NIM6 579 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 SPDYE5A6NIY4 337 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 TSPAN1O60635 241 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 GCATO75600 419 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 KRT38O76015 456 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 HAUS5O94927 633 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 TTC30AQ86WT1 665 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 NLRP7Q8WX94 980 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 SKA1Q96BD8 255 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 MTBPQ96DY7 904 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 NUDCD1Q96RS6 583 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 SNRNP25Q9BV90 132 aaKnown RBP16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 TMEM120AQ9BXJ8 343 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 NRDE2Q9H7Z3 1164 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 PLEKHA5Q9HAU0 1116 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 GPATCH2LQ9NWQ4 482 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 NKX1-2Q9UD57 310 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 CITO14578 2027 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 LMNAP02545 664 aaKnown RBP16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 APOEP02649 317 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 TPBGLP0DKB5 382 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 ZFXP17010 805 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 GM2AP17900 193 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 GRM5P41594 1212 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 MAGEA3P43357 314 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 GCLCP48506 637 aaPredicted RBP16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 NR2C2P49116 596 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 HDAC4P56524 1084 aa16.63■□□□□ 0.25
CHMP1A-202ENST00000535997 ZBTB16Q05516 673 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms