RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ERP44Q9BS26 406 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 LSM14BQ9BX40 385 aaKnown RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 BRINP2Q9C0B6 783 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 YIPF3Q9GZM5 350 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MIS12Q9H081 205 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SUDS3Q9H7L9 328 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 EPB41L4AQ9HCS5 686 aaPredicted RBP6.97□□□□□ -1.29
USP28-202ENST00000535607 C6orf50Q9HD87 102 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP28-202ENST00000535607 EHD2Q9NZN4 543 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 PDP2Q9P2J9 529 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 KCNG1Q9UIX4 513 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 DSEQ9UL01 958 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 MYH4Q9Y623 1939 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 SCN9AQ15858 1988 aa6.97□□□□□ -1.29
USP28-202ENST00000535607 COL4A5P29400 1685 aa6.96□□□□□ -1.29
USP28-202ENST00000535607 DDX60LQ5H9U9 1706 aaKnown RBP6.96□□□□□ -1.29
USP28-202ENST00000535607 SLC12A8A0AV02 714 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ENO4A6NNW6 628 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 hCG_1984214I3L0E3 225 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 NDC80O14777 642 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 WNT9AO14904 365 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CETN3O15182 167 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 MAPK13O15264 365 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 DAPK3O43293 454 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CREB3O43889 395 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PRDM1O75626 825 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 COL6A2P12110 1019 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CCNB1P14635 433 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 POU3F2P20265 443 aaPredicted RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 CALB2P22676 271 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 RPS12P25398 132 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 KLRC1P26715 233 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 MAN1A1P33908 653 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 SLC6A11P48066 632 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PTENP60484 403 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 IL2P60568 153 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 POLR2FP61218 127 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 NCALDP61601 193 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 IL9RQ01113 521 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 TROAPQ12815 778 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CALCOCO2Q13137 446 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 LAMB3Q13751 1172 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 KIR3DS1Q14943 382 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 KPNB1Q14974 876 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 NONOQ15233 471 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP28-202ENST00000535607 CCDC6Q16204 474 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 MUM1Q2TAK8 710 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 KIAA1755Q5JYT7 1200 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 KRT79Q5XKE5 535 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ARHGAP36Q6ZRI8 547 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 OTOP3Q7RTS5 596 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ARHGAP22Q7Z5H3 698 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 DAAM2Q86T65 1068 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 VSIG1Q86XK7 387 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CCDC65Q8IXS2 484 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP28-202ENST00000535607 UBR7Q8N806 425 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ZNF713Q8N859 430 aaPredicted RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 CHST14Q8NCH0 376 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 BBOF1Q8ND07 529 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 SMC1BQ8NDV3 1235 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.96□□□□□ -1.3
USP28-202ENST00000535607 PIP4K2CQ8TBX8 421 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PHOSPHO1Q8TCT1 267 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PIGOQ8TEQ8 1089 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 TEKT4Q8WW24 435 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 MAIP1Q8WWC4 291 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ZNF570Q96NI8 536 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PRMT1Q99873 361 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 MXD3Q9BW11 206 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CARD9Q9H257 536 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 DCLRE1BQ9H816 532 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 RNPEPL1Q9HAU8 725 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 ZNF287Q9HBT7 754 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 METTL14Q9HCE5 456 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 SLC6A20Q9NP91 592 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 TYW1Q9NV66 732 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 PANK4Q9NVE7 773 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 IL1RAPL1Q9NZN1 696 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 CNOT8Q9UFF9 292 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 PNMA2Q9UL42 364 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 STK38LQ9Y2H1 464 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PCDHB4Q9Y5E5 795 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 DYNC1LI1Q9Y6G9 523 aaKnown RBP6.96□□□□□ -1.3
USP28-202ENST00000535607 GAKO14976 1311 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 PASKQ96RG2 1323 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 KDM3AQ9Y4C1 1321 aa6.96□□□□□ -1.3
USP28-202ENST00000535607 FOCADQ5VW36 1801 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 ZC3H12DA2A288 527 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 ZSCAN5CA6NGD5 496 aaPredicted RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 NOTOA8MTQ0 251 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 UBE2Q2LH0YL09 131 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 TRAF5O00463 557 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 CAND2O75155 1236 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 KRT37O76014 449 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 PLEKHA8P1O95397 391 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 EYA4O95677 639 aa6.95□□□□□ -1.3
USP28-202ENST00000535607 OAS1P00973 400 aaKnown RBP6.95□□□□□ -1.3
USP28-202ENST00000535607 LDHCP07864 332 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms