RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 CLIC5Q9NZA1 410 aa13.92□□□□□ -0.18
HDAC4-214ENST00000535493 PCDHGB4Q9UN71 923 aa13.92□□□□□ -0.18
HDAC4-214ENST00000535493 PCDHGB5Q9Y5G0 923 aa13.92□□□□□ -0.18
HDAC4-214ENST00000535493 APOC4-APOC2K7ER74 178 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 BUD23O43709 281 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 CSDE1O75534 798 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 APOC2P02655 101 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 GJB1P08034 283 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 ASNSP08243 561 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 KRT7P08729 469 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 RANBP1P43487 201 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 ATXN3P54252 364 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 CUL3Q13618 768 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 KCNJ11Q14654 390 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 TEX44Q53QW1 395 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 C6orf163Q5TEZ5 329 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 SATL1Q86VE3 508 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 CAND1Q86VP6 1230 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 NLGN1Q8N2Q7 840 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 B4GALNT2Q8NHY0 566 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 PPP1R36Q96LQ0 422 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 TRAPPC9Q96Q05 1148 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 DEFB129Q9H1M3 183 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 RPAP3Q9H6T3 665 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 MAN1C1Q9NR34 630 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 FETUBQ9UGM5 382 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 HBS1LQ9Y450 684 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 MYOCOSA0A1B0GUC4 107 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 H0YIN7 160 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 KRT37O76014 449 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 SERPINB6P35237 376 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 CPOXP36551 454 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 ZNF699Q32M78 642 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 TRMT5Q32P41 509 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 LIN52Q52LA3 116 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 HPS6Q86YV9 775 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 ADGRF2Q8IZF7 708 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 EZH1Q92800 747 aaPredicted RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 DNAJC1Q96KC8 554 aaKnown RBP13.91□□□□□ -0.18
HDAC4-214ENST00000535493 NDNQ99608 321 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 WWP1Q9H0M0 922 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 PDP2Q9P2J9 529 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 DNAJC16Q9Y2G8 782 aa13.91□□□□□ -0.18
HDAC4-214ENST00000535493 hCG_2014768A0A024R1R8 64 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 PLA2G6O60733 806 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 STIP1P31948 543 aaKnown RBP13.9□□□□□ -0.18
HDAC4-214ENST00000535493 USP4Q13107 963 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 PPP6R3Q5H9R7 873 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-214ENST00000535493 FAM102AQ5T9C2 384 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-214ENST00000535493 BSPRYQ5W0U4 402 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 TMEM192Q8IY95 271 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 NIF3L1Q9GZT8 377 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 PNPOQ9NVS9 261 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 LOXHD1Q8IVV2 1947 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 HMGCRP04035 888 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 NCF2P19878 526 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-214ENST00000535493 PTPN7P35236 360 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 STX3Q13277 289 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 HIC1Q14526 733 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 TRNP1Q6NT89 227 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 ABHD15Q6UXT9 468 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 UNC5AQ6ZN44 842 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 XYLT1Q86Y38 959 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 UBR7Q8N806 425 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 TTC13Q8NBP0 860 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 OR6Y1Q8NGX8 325 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 ZFAND2BQ8WV99 257 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 POPDC2Q9HBU9 364 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 ZNF277Q9NRM2 450 aaPredicted RBP13.9□□□□□ -0.18
HDAC4-214ENST00000535493 SYNPO2Q9UMS6 1093 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 STYXL1Q9Y6J8 313 aa13.9□□□□□ -0.18
HDAC4-214ENST00000535493 F8W8V4 182 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 EIF4BP23588 611 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 CRABP2P29373 138 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 CCND2P30279 289 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 ASPAP45381 313 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 MSLNQ13421 630 aaPredicted RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 CAPSQ13938 189 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 TRIP10Q15642 601 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 FASTKD1Q53R41 847 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 ATG16L1Q676U5 607 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 SNRNP48Q6IEG0 339 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 PAOXQ6QHF9 649 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 FAM43BQ6ZT52 329 aaPredicted RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 NIPA2Q8N8Q9 360 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 PORCNQ9H237 461 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 USP29Q9HBJ7 922 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 XAB2Q9HCS7 855 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 ETNK2Q9NVF9 386 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 ZNF358Q9NW07 568 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 DDX43Q9NXZ2 648 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 SIRPGQ9P1W8 387 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 LY75O60449 1722 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 TRUB2O95900 331 aaKnown RBP13.89□□□□□ -0.19
HDAC4-214ENST00000535493 EGFRP00533 1210 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 ARRB2P32121 409 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 PPM1JQ5JR12 505 aa13.89□□□□□ -0.19
HDAC4-214ENST00000535493 CASC4Q6P4E1 433 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms