RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 MAGEB16A2A368 324 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 URADA6NGE7 173 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 DIAPH2O60879 1101 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 CYP3A4P08684 503 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 SKOR1P84550 965 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 ZNF200P98182 395 aaPredicted RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 SF3A3Q12874 501 aaKnown RBP eCLIP4.39□□□□□ -1.71
VCAN-209ENST00000513016 PLPP4Q5VZY2 271 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 LCA5Q86VQ0 697 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 C10orf53Q8N6V4 93 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 MTMR14Q8NCE2 650 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 C1orf54Q8WWF1 131 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 KLHL29Q96CT2 875 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 PNMA5Q96PV4 448 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 TBCBQ99426 244 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 GPR20Q99678 358 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 MRPL46Q9H2W6 279 aaKnown RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 TRHDEQ9UKU6 1024 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 VWDEQ8N2E2 1590 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 KPNA5O15131 536 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 TSPAN3O60637 253 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 GLP2RO95838 553 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 IFNA14P01570 189 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 CXCL8P10145 99 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 ITGAXP20702 1163 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 CASP1P29466 404 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 OR1E1P30953 314 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 RFC2P35250 354 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 CNTN2Q02246 1040 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 IFT88Q13099 833 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 ALG11Q2TAA5 492 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 COBLL1Q53SF7 1204 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 NOL9Q5SY16 702 aaKnown RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 SETD3Q86TU7 594 aaPredicted RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 VSIG10LQ86VR7 867 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 CASP10Q92851 521 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 HPS3Q969F9 1004 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 ZNF669Q96BR6 464 aaPredicted RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 STAMBPL1Q96FJ0 436 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 PRKD2Q9BZL6 878 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 SLC13A1Q9BZW2 595 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 TUBGCP4Q9UGJ1 667 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 AKAP5P24588 427 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 TRPC1P48995 793 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 GTF2A1P52655 376 aaPredicted RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 ARFIP2P53365 341 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 CYP2A13Q16696 494 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 DUSP28Q4G0W2 176 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 GRAMD4Q6IC98 578 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 DENND5BQ6ZUT9 1274 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 SLC35G2Q8TBE7 412 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 GRID1Q9ULK0 1009 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 TNFSF13BQ9Y275 285 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 DERAQ9Y315 318 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 FER1L4A9Z1Z3 1794 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 TTC26A0AVF1 554 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 TIMM44O43615 452 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 SNRPAP09012 282 aaKnown RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 CXCR2P25025 360 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 RANBP1P43487 201 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 PRAMEF19Q5SWL8 479 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 KLHDC7AQ5VTJ3 777 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 LRRC8EQ6NSJ5 796 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 LRRC49Q8IUZ0 686 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 FAM172AQ8WUF8 416 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 RMDN2Q96LZ7 410 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 PGLYRP2Q96PD5 576 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 MTMR9Q96QG7 549 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 ACTR5Q9H9F9 607 aaPredicted RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 KLHL28Q9NXS3 571 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 MARCH2Q9P0N8 246 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 SCHIP1Q9P0W5 487 aaPredicted RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 GPR25O00155 361 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 CACNB4O00305 520 aaPredicted RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 TEX33O43247 280 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 ATG13O75143 517 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 SPAG7O75391 227 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 MED24O75448 989 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 LGR5O75473 907 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 GSNP06396 782 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 FGFR1P11362 822 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 CYP11B1P15538 503 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 CES1P23141 567 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 RARRES1P49788 294 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 MCL1Q07820 350 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 FOXD4Q12950 439 aaPredicted RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 NNTQ13423 1086 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 ZNF697Q5TEC3 545 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 LYPLAL1Q5VWZ2 237 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 PPIL6Q8IXY8 311 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 HEXDCQ8WVB3 486 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 CMTM5Q96DZ9 223 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 TRIT1Q9H3H1 467 aaKnown RBP4.38□□□□□ -1.71
VCAN-209ENST00000513016 CISHQ9NSE2 258 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 SOHLH2Q9NX45 425 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 KCTD5Q9NXV2 234 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 STOML1Q9UBI4 398 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 RNF112Q9ULX5 631 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 ST3GAL5Q9UNP4 418 aa4.38□□□□□ -1.71
VCAN-209ENST00000513016 AP4E1Q9UPM8 1137 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms