RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 GFRA2O00451 464 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 CALUO43852 315 aaPredicted RBP22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 ZNF132P52740 706 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 CDH8P55286 799 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 CLDN10P78369 228 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 EHHADHQ08426 723 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 EMC10Q5UCC4 262 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 SHC4Q6S5L8 630 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 TTC39CQ8N584 583 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 DEFB124Q8NES8 71 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 TMC2Q8TDI7 906 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 UCMAQ8WVF2 138 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 ZNF516Q92618 1163 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 BLZF1Q9H2G9 400 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 USP25Q9UHP3 1055 aa22.21■■□□□ 1.15
SQSTM1-210ENST00000506042 MAP1BP46821 2468 aaKnown RBP22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 MYH10P35580 1976 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 PDXKO00764 312 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 GIPC1O14908 333 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 CACNG3O60359 315 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 ZDHHC11BP0C7U3 371 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 RALAP11233 206 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 PTGER3P43115 390 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 PLA2G4AP47712 749 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 DGKGP49619 791 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 MAP3K7CLP57077 242 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 SLC8A3P57103 927 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 ZNF33AQ06730 810 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 WDR45BQ5MNZ6 344 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 PEAR1Q5VY43 1037 aaPredicted RBP22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 KLHDC10Q6PID8 442 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 RGL4Q8IZJ4 473 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 FUKQ8N0W3 1084 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 CRYBG2Q8N1P7 616 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 SLC2A14Q8TDB8 520 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 TMEM174Q8WUU8 243 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 CSNK1G1Q9HCP0 422 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 CALCOCO1Q9P1Z2 691 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 DNMT3LQ9UJW3 386 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 NEUROG3Q9Y4Z2 214 aa22.2■■□□□ 1.14
SQSTM1-210ENST00000506042 ABCA7Q8IZY2 2146 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 A0A1W2PQD8 194 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 LRRIQ3A6PVS8 624 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 ADAM23O75077 832 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 KRT13P13646 458 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 TYRP14679 529 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 CHKAP35790 457 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 NDST1P52848 882 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 TMEM25Q86YD3 366 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 PHTF2Q8N3S3 785 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 KDF1Q8NAX2 398 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 CCDC34Q96HJ3 373 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 ZFRQ96KR1 1074 aaKnown RBP22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 SCNM1Q9BWG6 230 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 NT5C1AQ9BXI3 368 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 DCLK3Q9C098 648 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 CYP3A43Q9HB55 503 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 CYLDQ9NQC7 956 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 TMEM30AQ9NV96 361 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 MARK1Q9P0L2 795 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 SCML2Q9UQR0 700 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 NME7Q9Y5B8 376 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 PCDHB9Q9Y5E1 797 aa22.19■■□□□ 1.14
SQSTM1-210ENST00000506042 C4BPAP04003 597 aaKnown RBP22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 CYBBP04839 570 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 SLFN14P0C7P3 912 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 CCDC130P13994 396 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 GABRG2P18507 467 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 ITPKAP23677 461 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 CASP4P49662 377 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 SLC14A1Q13336 389 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 ZACNQ401N2 412 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 C10orf120Q5SQS8 335 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 RESP18Q5W5W9 173 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 CEP135Q66GS9 1140 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 HSCBQ8IWL3 235 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 ARHGAP18Q8N392 663 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 ZDHHC5Q9C0B5 715 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 ZMIZ1Q9ULJ6 1067 aa22.18■■□□□ 1.14
SQSTM1-210ENST00000506042 NR3C1P04150 777 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 HNRNPLP14866 589 aaKnown RBP eCLIP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 RPL13P26373 211 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 ADORA2BP29275 332 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 SIM1P81133 766 aaPredicted RBP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 COG7P83436 770 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 CUL4BQ13620 913 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 ZNF423Q2M1K9 1284 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 TPGS1Q6ZTW0 290 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 IPO4Q8TEX9 1081 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 HNRNPABQ99729 332 aaKnown RBP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 BACH2Q9BYV9 841 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 FAM49BQ9NUQ9 324 aa22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 MBD1Q9UIS9 605 aaPredicted RBP22.17■■□□□ 1.14
SQSTM1-210ENST00000506042 ATXN2Q99700 1313 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-210ENST00000506042 TNRC6BQ9UPQ9 1833 aaKnown RBP22.16■■□□□ 1.14
SQSTM1-210ENST00000506042 C1QTNF9BB2RNN3 333 aa22.16■■□□□ 1.14
SQSTM1-210ENST00000506042 ARHGAP33O14559 1287 aa22.16■■□□□ 1.14
SQSTM1-210ENST00000506042 MAPK13O15264 365 aa22.16■■□□□ 1.14
SQSTM1-210ENST00000506042 ASS1P00966 412 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms