RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 KRT23Q9C075 422 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 WNT8AQ9H1J5 351 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ABCG8Q9H221 673 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 TRIM39Q9HCM9 518 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 HPF1Q9NWY4 346 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GALNT8Q9NY28 637 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ARPP21Q9UBL0 812 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 TTC7AQ9ULT0 858 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 HPCAL4Q9UM19 191 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 CAB39Q9Y376 341 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 CLUHO75153 1309 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ABCB11O95342 1321 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PRMT3O60678 531 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 TMCC2O75069 709 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 SEMA3DO95025 777 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ATF6P18850 670 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MAPK3P27361 379 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 POLR2BP30876 1174 aaKnown RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 MATKP42679 507 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 PHEXP78562 749 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MYL7Q01449 175 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 DUOXA1Q1HG43 343 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MANEAQ5SRI9 462 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 DEPDC1Q5TB30 811 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 GDF6Q6KF10 455 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 SLC36A4Q6YBV0 504 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IKBIPQ70UQ0 350 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ZBTB8BQ8NAP8 495 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 ZNF512BQ96KM6 892 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 UROC1Q96N76 676 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 YIPF2Q9BWQ6 316 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ARMT1Q9H993 441 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 ZBTB40Q9NUA8 1239 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 C20orf96Q9NUD7 363 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 GTF2IRD1Q9UHL9 959 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 LCMT1Q9UIC8 334 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 MAGED2Q9UNF1 606 aaPredicted RBP5.32□□□□□ -1.56
USP54-216ENST00000498143 MAD1L1Q9Y6D9 718 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 SESN1Q9Y6P5 492 aa5.32□□□□□ -1.56
USP54-216ENST00000498143 IFT172Q9UG01 1749 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 A6NCN8 305 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 AKR1B15C9JRZ8 316 aaPredicted RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 H0YCG3 227 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 ABLIM1O14639 778 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 TCEA3O75764 348 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 IFNA14P01570 189 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CNPP09543 421 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 ZNF806P0C7X5 589 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CCDC166P0CW27 439 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CD44P16070 742 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 PDHA2P29803 388 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 IFNA8P32881 189 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 GNALP38405 381 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 SKIV2L2P42285 1042 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 PLA2G4AP47712 749 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 NEK3P51956 506 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 OAZ1P54368 228 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 BCAR1P56945 870 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 SPIRE1Q08AE8 756 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 PLD1Q13393 1074 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CTTNQ14247 550 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 KYNUQ16719 465 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 HIBCHQ6NVY1 386 aaPredicted RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 CYP26C1Q6V0L0 522 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 ITIH5Q86UX2 942 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 RASSF3Q86WH2 238 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 FSIP1Q8NA03 581 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 MINDY2Q8NBR6 621 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 MCUR1Q96AQ8 359 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 RBM41Q96IZ5 413 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 KLHL31Q9H511 634 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 PTPRHQ9HD43 1115 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CYLDQ9NQC7 956 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 KRT84Q9NSB2 600 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CUEDC1Q9NWM3 386 aaPredicted RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.31□□□□□ -1.56
USP54-216ENST00000498143 EPS15L1Q9UBC2 864 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 SPASTQ9UBP0 616 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 FLT1P17948 1338 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 TIAM2Q8IVF5 1701 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 hCG_1642624A0A1W2PR95 340 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 MAGEB16A2A368 324 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 KRT87PA6NCN2 255 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 B8ZZF3 427 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 hCG_1984214I3L0E3 225 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 NDUFB10O96000 172 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 C8AP07357 584 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 NR3C2P08235 984 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 GSTA2P09210 222 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 SMIM10L2AP0DMW4 78 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 SMIM10L2BP0DMW5 78 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 ENPP1P22413 925 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 PRKACBP22694 351 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 CDK8P49336 464 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 GDI2P50395 445 aaKnown RBP5.31□□□□□ -1.56
USP54-216ENST00000498143 AKR1D1P51857 326 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 MYO1EQ12965 1108 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 KCNB1Q14721 858 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 ATAD3BQ5T9A4 648 aa5.31□□□□□ -1.56
USP54-216ENST00000498143 ZNF554Q86TJ5 538 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms