RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 DNMT3LQ9UJW3 386 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 STRIP2Q9ULQ0 834 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 ARHGAP26Q9UNA1 814 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 NUMBLQ9Y6R0 609 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 MYH10P35580 1976 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 NOTCH4Q99466 2003 aa17.93■□□□□ 0.46
HDAC6-235ENST00000495515 CAPN9O14815 690 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 COCHO43405 550 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 ERBB2P04626 1255 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 CALB1P05937 261 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 GZMAP12544 262 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 MMP8P22894 467 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 SCNN1AP37088 669 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 YWHAZP63104 245 aaKnown RBP17.92■□□□□ 0.46
HDAC6-235ENST00000495515 SLC6A3Q01959 620 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 GOLGA8FQ08AF8 430 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 GOLGA8DPQ0D2H9 430 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 BEND5Q7L4P6 421 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 BHLHA9Q7RTU4 235 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 PHF13Q86YI8 300 aaPredicted RBP17.92■□□□□ 0.46
HDAC6-235ENST00000495515 DEPDC1BQ8WUY9 529 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 FGF14Q92915 247 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 GRPEL1Q9HAV7 217 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 OSER1Q9NX31 292 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 ADAM22Q9P0K1 906 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 WDR35Q9P2L0 1181 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 IMPACTQ9P2X3 320 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 PATJQ8NI35 1801 aa17.92■□□□□ 0.46
HDAC6-235ENST00000495515 HEPACAM2A8MVW5 462 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 HSF2BPO75031 334 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 PGFP49763 221 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 C1QBPQ07021 282 aaKnown RBP17.91■□□□□ 0.46
HDAC6-235ENST00000495515 TANGO2Q6ICL3 276 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 ACAD10Q6JQN1 1059 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 POTEHQ6S545 545 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 MMS22LQ6ZRQ5 1243 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 FAM183BPQ6ZVS7 135 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 RNF135Q8IUD6 432 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 YAF2Q8IY57 180 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 SLC30A5Q8TAD4 765 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 CLEC4CQ8WTT0 213 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 USP13Q92995 863 aaPredicted RBP17.91■□□□□ 0.46
HDAC6-235ENST00000495515 SLC22A12Q96S37 553 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 KXD1Q9BQD3 176 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 C11orf70Q9BRQ4 267 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 RNF38Q9H0F5 515 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 DEF6Q9H4E7 631 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 POPDC2Q9HBU9 364 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 THG1LQ9NWX6 298 aaKnown RBP17.91■□□□□ 0.46
HDAC6-235ENST00000495515 CPQQ9Y646 472 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 SPTBN5Q9NRC6 3674 aaKnown RBP17.91■□□□□ 0.46
HDAC6-235ENST00000495515 DOCK6Q96HP0 2047 aa17.91■□□□□ 0.46
HDAC6-235ENST00000495515 GREB1Q4ZG55 1949 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 SSU72P8A0A1W2PR75 194 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 PRAMEF12O95522 483 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 NCAM1P13591 858 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 TCF3P15923 654 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 PSMC3P17980 439 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 FCARP24071 287 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 VIPR2P41587 438 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 COG7P83436 770 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 CDK17Q00537 523 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 TDGQ13569 410 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 CC2D1AQ6P1N0 951 aaPredicted RBP17.9■□□□□ 0.46
HDAC6-235ENST00000495515 OLFML1Q6UWY5 402 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 SLC26A9Q7LBE3 791 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 MFSD6LQ8IWD5 586 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 BPIFB1Q8TDL5 484 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 EDEM1Q92611 657 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 VCPIP1Q96JH7 1222 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 NECAB3Q96P71 396 aaPredicted RBP17.9■□□□□ 0.46
HDAC6-235ENST00000495515 SMG9Q9H0W8 520 aaKnown RBP17.9■□□□□ 0.46
HDAC6-235ENST00000495515 ARHGAP20Q9P2F6 1191 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 TJP2Q9UDY2 1190 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 ADAMTS1Q9UHI8 967 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 SORCS3Q9UPU3 1222 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 XIRP2A4UGR9 3374 aa17.9■□□□□ 0.46
HDAC6-235ENST00000495515 DDX3XO00571 662 aaKnown RBP eCLIP17.89■□□□□ 0.45
HDAC6-235ENST00000495515 RTN2O75298 545 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 TBX18O95935 607 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 ASGR2P07307 311 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 KPNA1P52294 538 aaPredicted RBP17.89■□□□□ 0.45
HDAC6-235ENST00000495515 EFEMP1Q12805 493 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 FAM102AQ5T9C2 384 aaPredicted RBP17.89■□□□□ 0.45
HDAC6-235ENST00000495515 WDR59Q6PJI9 974 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 HFE2Q6ZVN8 426 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 XYLT1Q86Y38 959 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 SLC44A3Q8N4M1 653 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 KIAA1958Q8N8K9 716 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 SH3RF2Q8TEC5 729 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 TRIM11Q96F44 468 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 CCDC42Q96M95 316 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 TRMT61BQ9BVS5 477 aaKnown RBP17.89■□□□□ 0.45
HDAC6-235ENST00000495515 SMPD4Q9NXE4 827 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 MARCH2Q9P0N8 246 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 RASAL2Q9UJF2 1139 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 NUDT5Q9UKK9 219 aa17.89■□□□□ 0.45
HDAC6-235ENST00000495515 TMCO5BA8MYB1 307 aa17.88■□□□□ 0.45
HDAC6-235ENST00000495515 GOLGA8SH3BPF8 625 aa17.88■□□□□ 0.45
HDAC6-235ENST00000495515 LEFTY2O00292 366 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms