RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 GARTP22102 1010 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 RING1Q06587 406 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 KCNA1Q09470 495 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 TWF1Q12792 350 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 TCF15Q12870 199 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 PLD1Q13393 1074 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 MYBPC2Q14324 1141 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 CWF19L1Q69YN2 538 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 IQCEQ6IPM2 695 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ARMCX5Q6P1M9 558 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 PARM1Q6UWI2 310 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 CRELD2Q6UXH1 353 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 PDZD4Q76G19 769 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 NT5DC4Q86YG4 428 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 TMEM105Q8N8V8 129 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 LEMD2Q8NC56 503 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ING5Q8WYH8 240 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 FGF14Q92915 247 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 SAAL1Q96ER3 474 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 SENP8Q96LD8 212 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF512Q96ME7 567 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 FAM129BQ96TA1 746 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 RTP3Q9BQQ7 232 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 IKZF4Q9H2S9 585 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 MAGEF1Q9HAY2 307 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 ATP13A1Q9HD20 1204 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 SLC2A4RGQ9NR83 387 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 KBTBD4Q9NVX7 518 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 DPP3Q9NY33 737 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 RBAKQ9NYW8 714 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 GDE1Q9NZC3 331 aa7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 TIMM13Q9Y5L4 95 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-213ENST00000476903 NUP210Q8TEM1 1887 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 KIAA0391O15091 583 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 EIF3DO15371 548 aaKnown RBP eCLIP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 EXTL3O43909 919 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 PRPF6O94906 941 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 OR4Q2P0C623 313 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CEBPBP17676 345 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 AOC1P19801 751 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 HOXA5P20719 270 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 PNPLA4P41247 253 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ME1P48163 572 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 TAF6P49848 677 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ASIC1P78348 528 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF252P-AS1Q0IIN9 211 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 GPR17Q13304 367 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 PKP1Q13835 747 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 SLC5A9Q2M3M2 681 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 SV2CQ496J9 727 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CYP4A22Q5TCH4 519 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CNNM4Q6P4Q7 775 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 SHC4Q6S5L8 630 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ATG14Q6ZNE5 492 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 METTL23Q86XA0 190 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 BRSK2Q8IWQ3 736 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 EFCAB13Q8IY85 973 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 THEM5Q8N1Q8 247 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ST13P5Q8NFI4 369 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CACTINQ8WUQ7 758 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ZNF560Q96MR9 790 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 PGLYRP2Q96PD5 576 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 KXD1Q9BQD3 176 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 PYM1Q9BRP8 204 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 RPP25Q9BUL9 199 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 FGFBP2Q9BYJ0 223 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 TRIM9Q9C026 710 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ASAH2Q9NR71 780 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 ARHGEF3Q9NR81 526 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CA14Q9ULX7 337 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 YIPF1Q9Y548 306 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 CACNA1HO95180 2353 aa7.32□□□□□ -1.24
CCDC88A-213ENST00000476903 UBE4BO95155 1302 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 TICRRQ7Z2Z1 1910 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 PIEZO1Q92508 2521 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 MTMR11A4FU01 709 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 GOLGA8IPA6NC78 632 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 GOLGA8JA6NMD2 632 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 KPNA7A9QM74 516 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 CYB561D2O14569 222 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 POLR2DO15514 142 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 OBSL1O75147 1896 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ECI2O75521 394 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ABL1P00519 1130 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 ALDH1A3P47895 512 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 MRE11P49959 708 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 EPHB3P54753 998 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 GPC5P78333 572 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 TFAMQ00059 246 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 PFKPQ01813 784 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 SMARCB1Q12824 385 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 DUSP4Q13115 394 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 SLC39A12Q504Y0 691 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 PPM1JQ5JR12 505 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 FAM26FQ5R3K3 315 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 CENPPQ6IPU0 288 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 UNC13DQ70J99 1090 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 CEP57L1Q8IYX8 460 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 GPD1LQ8N335 351 aa7.31□□□□□ -1.24
CCDC88A-213ENST00000476903 GPBAR1Q8TDU6 330 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms