RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 TRNP1Q6NT89 227 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 C4orf22Q6V702 233 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 CATSPER4Q7RTX7 472 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 C4orf33Q8N1A6 199 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 LRRC52Q8N7C0 313 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 LRRC8CQ8TDW0 803 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 RTP4Q96DX8 246 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 CYTH2Q99418 400 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 PAFAH2Q99487 392 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 UPF3AQ9H1J1 476 aaKnown RBP17.13■□□□□ 0.33
TMEM53-208ENST00000476724 CXCL16Q9H2A7 254 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 HESX1Q9UBX0 185 aa17.13■□□□□ 0.33
TMEM53-208ENST00000476724 H7C0C1 242 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 ADAMTS4O75173 837 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 BANF1O75531 89 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 NPTXRO95502 500 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 RARBP10826 455 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 PRKAR2AP13861 404 aaKnown RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SDC4P31431 198 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SKIV2L2P42285 1042 aaKnown RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 ATP5OP48047 213 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 APLP1P51693 650 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 GAD2Q05329 585 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 MMRN1Q13201 1228 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 RIPK1Q13546 671 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 C15orf59Q2T9L4 293 aaPredicted RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 NBPF20Q3BBV1 942 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 PPP1R26Q5T8A7 1209 aaPredicted RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SH3PXD2AQ5TCZ1 1133 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 OLFML1Q6UWY5 402 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SESTD1Q86VW0 696 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 MTG1Q9BT17 334 aaPredicted RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 EIF2AQ9BY44 585 aaKnown RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 PHTF1Q9UMS5 762 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 RALGAPA2Q2PPJ7 1873 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 A0A1W2PPM1 405 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 TCRBV7S3A2A0A539 114 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 MDM4O15151 490 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 TM9SF1O15321 606 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 MYCNP04198 464 aaPredicted RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 KRT4P19013 534 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 YARSP54577 528 aaKnown RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 NCALDP61601 193 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 KCNJ11Q14654 390 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SNX17Q15036 470 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 ZC3H18Q86VM9 953 aaKnown RBP17.12■□□□□ 0.33
TMEM53-208ENST00000476724 FITM2Q8N6M3 262 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 PLD5Q8N7P1 536 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 BEST2Q8NFU1 509 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 SLC35F5Q8WV83 523 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 ECT2Q9H8V3 914 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 KIF9Q9HAQ2 790 aa17.12■□□□□ 0.33
TMEM53-208ENST00000476724 APOL1O14791 398 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ZBTB6Q15916 424 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 PMF1Q6P1K2 205 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SLC27A1Q6PCB7 646 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 C12orf29Q8N999 325 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 DCAKDQ8WVC6 231 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 DNAI2Q9GZS0 605 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 USP29Q9HBJ7 922 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 XPNPEP3Q9NQH7 507 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 HES2Q9Y543 173 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SNX9Q9Y5X1 595 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 USH1CQ9Y6N9 552 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 THSD7BQ9C0I4 1608 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 IQANK1A0A1B0GTG1 560 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 BCLAF3A2AJT9 711 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 EDF1O60869 148 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 CAPN15O75808 1086 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ATP5HO75947 161 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ALDH3A1P30838 453 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SCNN1AP37088 669 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 GTF2A1P52655 376 aaPredicted RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 BCAR1P56945 870 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 DNAJC3Q13217 504 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SETDB1Q15047 1291 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SLC1A5Q15758 541 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SEPT7Q16181 437 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 CDO1Q16878 200 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ARHGAP17Q68EM7 881 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SLC9A4Q6AI14 798 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 GDF6Q6KF10 455 aaPredicted RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SCYL2Q6P3W7 929 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 NPNTQ6UXI9 565 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 FAM47EQ6ZV65 393 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ARCQ7LC44 396 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 TTC30AQ86WT1 665 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 REM2Q8IYK8 340 aaPredicted RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 MZB1Q8WU39 189 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 WNT8BQ93098 351 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 FAF2Q96CS3 445 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 MRRFQ96E11 262 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SNX27Q96L92 541 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 MRPL45Q9BRJ2 306 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 WDR83Q9BRX9 315 aaKnown RBP17.11■□□□□ 0.33
TMEM53-208ENST00000476724 ZNF670Q9BS34 389 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 PNPLA8Q9NP80 782 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 SRRDQ9UH36 339 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 GTF2IRD1Q9UHL9 959 aa17.11■□□□□ 0.33
TMEM53-208ENST00000476724 TEX264Q9Y6I9 313 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms