RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 GFRA2O00451 464 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 ZBTB43O43298 467 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 GREM1O60565 184 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 PRPF40AO75400 957 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 CISD3P0C7P0 127 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 GIMD1P0DJR0 217 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 SPATA31C1P0DKV0 1188 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 ODC1P11926 461 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 HARSP12081 509 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 GSPT1P15170 499 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 ABCB4P21439 1286 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 PRKCHP24723 683 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 CD27P26842 260 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 DUSP3P51452 185 aaPredicted RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 PDX1P52945 283 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 OXCT1P55809 520 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 GRIN1Q05586 938 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 ORC1Q13415 861 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 NTRK3Q16288 839 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 ISXQ2M1V0 245 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 SCARA3Q6AZY7 606 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 CAPRIN2Q6IMN6 1127 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 RSRC2Q7L4I2 434 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 DHX32Q7L7V1 743 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 MAMDC2Q7Z304 686 aaPredicted RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 VASH2Q86V25 355 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 SPATS2Q86XZ4 545 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 BBS7Q8IWZ6 715 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 MMP21Q8N119 569 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 KIAA1958Q8N8K9 716 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 RBBP8NLQ8NC74 664 aaPredicted RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 DEPTORQ8TB45 409 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 C2orf15Q8WU43 125 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 SIPA1Q96FS4 1042 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 PCED1AQ9H1Q7 454 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 UXTQ9UBK9 157 aaPredicted RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 PCDHB5Q9Y5E4 795 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 ENTPD2Q9Y5L3 495 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 TDRD6O60522 2096 aaKnown RBP5.15□□□□□ -1.59
USP4-209ENST00000475873 PHLPP2Q6ZVD8 1323 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 NBEAL1Q6ZS30 2694 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 PCSK5Q92824 1860 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 SCN8AQ9UQD0 1980 aa5.15□□□□□ -1.59
USP4-209ENST00000475873 KLF18A0A0U1RQI7 1052 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 ZNF840PA6NDX5 716 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 PIRO00625 290 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 WNT7AO00755 349 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 SLC27A2O14975 620 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 SGSM2O43147 1006 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 PRPF3O43395 683 aaKnown RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 FAM189A1O60320 539 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 CACNG3O60359 315 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 DFNA5O60443 496 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 SDC3O75056 442 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 FSBPO95073 299 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 PRKCGP05129 697 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 CENPBP07199 599 aaPredicted RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 KRT7P08729 469 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 C7P10643 843 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 MCF2P10911 925 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 SFTPCP11686 197 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 RARGP13631 454 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 GNLYP22749 145 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 OXTRP30559 389 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 MLLT10P55197 1068 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 RACK1P63244 317 aaKnown RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 ASIC1P78348 528 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 E2F1Q01094 437 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 EXOSC10Q01780 885 aaKnown RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 GAD2Q05329 585 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 KCNJ12Q14500 433 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 EARS2Q5JPH6 523 aaKnown RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 C9orf57Q5W0N0 161 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 GRAMD4Q6IC98 578 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 MPZL3Q6UWV2 235 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 DAW1Q8N136 415 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 SLC25A45Q8N413 288 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 MCPH1Q8NEM0 835 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 BICD2Q8TD16 824 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 DEPDC7Q96QD5 511 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 NACC1Q96RE7 527 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 ACE2Q9BYF1 805 aaPredicted RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 GZF1Q9H116 711 aaPredicted RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 SPHK2Q9NRA0 654 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 TMEM30AQ9NV96 361 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 DNAJC17Q9NVM6 304 aaKnown RBP5.14□□□□□ -1.59
USP4-209ENST00000475873 ANAPC2Q9UJX6 822 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 PCDHGA8Q9Y5G5 932 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 TCHHQ07283 1943 aa5.14□□□□□ -1.59
USP4-209ENST00000475873 TACC2O95359 2948 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 DCHS2Q6V1P9 2916 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 PRRC2CQ9Y520 2896 aaKnown RBP5.13□□□□□ -1.59
USP4-209ENST00000475873 LACTBL1A8MY62 500 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 CYB561D2O14569 222 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 SLC9A3R1O14745 358 aaPredicted RBP5.13□□□□□ -1.59
USP4-209ENST00000475873 ZBTB24O43167 697 aaPredicted RBP5.13□□□□□ -1.59
USP4-209ENST00000475873 CYP26A1O43174 497 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 TNFSF15O95150 251 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 GJB6O95452 261 aa5.13□□□□□ -1.59
USP4-209ENST00000475873 SEMA4FO95754 770 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms