RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 Q6ZNB5 142 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 PIGZQ86VD9 579 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 CCDC33Q8N5R6 958 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 NAT16Q8N8M0 369 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 IL17RCQ8NAC3 791 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KAT5Q92993 513 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 EXOC4Q96A65 974 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 SPHK2Q9NRA0 654 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 EBF1Q9UH73 591 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 RAB23Q9ULC3 237 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 MMP17Q9ULZ9 603 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 SH3BP1Q9Y3L3 701 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 RALGAPA1Q6GYQ0 2036 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 MYO18AQ92614 2054 aaKnown RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 BIN1O00499 593 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 PSMA7O14818 248 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 DCLK1O15075 740 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 AXIN1O15169 862 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ADAM23O75077 832 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 TULP3O75386 442 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 GABBR2O75899 941 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KLKB1P03952 638 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ATP5C1P36542 298 aaKnown RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 LRMPQ12912 555 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 KLHL10Q6JEL2 608 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 RASSF3Q86WH2 238 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ZNF276Q8N554 614 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ALLCQ8N6M5 410 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 SECISBP2LQ93073 1101 aaKnown RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ACDQ96AP0 544 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 CEP63Q96MT8 703 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ZSWIM1Q9BR11 485 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 FAM124BQ9H5Z6 455 aaPredicted RBP14.85□□□□□ -0.03
UPF3A-204ENST00000475218 ARHGEF4Q9NR80 690 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 SEMA4GQ9NTN9 838 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 USP18Q9UMW8 372 aa14.85□□□□□ -0.03
UPF3A-204ENST00000475218 SGK1O00141 431 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 PMM2O15305 246 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 STC2O76061 302 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 APBB3O95704 486 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 GAD2Q05329 585 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 FOXR2Q6PJQ5 311 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 CEP68Q76N32 757 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 ERMP1Q7Z2K6 904 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 TTC39CQ8N584 583 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 GPR161Q8N6U8 529 aaKnown RBP14.84□□□□□ -0.03
UPF3A-204ENST00000475218 ANKRD52Q8NB46 1076 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 NELFBQ8WX92 580 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 TFAP2BQ92481 460 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 NDRG1Q92597 394 aaKnown RBP14.84□□□□□ -0.03
UPF3A-204ENST00000475218 ZC3H10Q96K80 434 aaKnown RBP14.84□□□□□ -0.03
UPF3A-204ENST00000475218 MED15Q96RN5 788 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 GTPBP4Q9BZE4 634 aaKnown RBP14.84□□□□□ -0.03
UPF3A-204ENST00000475218 UBXN6Q9BZV1 441 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 CLIC5Q9NZA1 410 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 HOOK1Q9UJC3 728 aaKnown RBP14.84□□□□□ -0.03
UPF3A-204ENST00000475218 NAGPAQ9UK23 515 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 CTNND2Q9UQB3 1225 aa14.84□□□□□ -0.03
UPF3A-204ENST00000475218 RNF225M0QZC1 329 aaPredicted RBP14.83□□□□□ -0.03
UPF3A-204ENST00000475218 LRP3O75074 770 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 CALCAP01258 141 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 GRIA2P42262 883 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 PDE4CQ08493 712 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 PUM1Q14671 1186 aaKnown RBP eCLIP14.83□□□□□ -0.033e-6■■□□□ 11.4
UPF3A-204ENST00000475218 CCDC6Q16204 474 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 GOLGA7BQ2TAP0 167 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 PKDCCQ504Y2 493 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 MIB1Q86YT6 1006 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 TXNDC5Q8NBS9 432 aaKnown RBP14.83□□□□□ -0.03
UPF3A-204ENST00000475218 NACA2Q9H009 215 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 DUSP15Q9H1R2 295 aaPredicted RBP14.83□□□□□ -0.03
UPF3A-204ENST00000475218 DNMT3LQ9UJW3 386 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 TSPAN16Q9UKR8 245 aa14.83□□□□□ -0.03
UPF3A-204ENST00000475218 CIZ1Q9ULV3 898 aaPredicted RBP14.83□□□□□ -0.03
UPF3A-204ENST00000475218 MED19A0JLT2 244 aaPredicted RBP14.83□□□□□ -0.04
UPF3A-204ENST00000475218 O00370 1275 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 GDF9O60383 454 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 KLF8O95600 359 aaPredicted RBP14.83□□□□□ -0.04
UPF3A-204ENST00000475218 TIE1P35590 1138 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 STX17P56962 302 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 MRPS21P82921 87 aaKnown RBP14.83□□□□□ -0.04
UPF3A-204ENST00000475218 LMNB2Q03252 620 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 CRY1Q16526 586 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 CSRP2Q16527 193 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 PLK5Q496M5 336 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 C10orf120Q5SQS8 335 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 PM20D1Q6GTS8 502 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 CACNA2D4Q7Z3S7 1137 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 TRIM59Q8IWR1 403 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 ABCA7Q8IZY2 2146 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 MDGA1Q8NFP4 955 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 TPSD1Q9BZJ3 242 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 METTL14Q9HCE5 456 aaKnown RBP14.83□□□□□ -0.04
UPF3A-204ENST00000475218 MARK1Q9P0L2 795 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 INVSQ9Y283 1065 aa14.83□□□□□ -0.04
UPF3A-204ENST00000475218 NCOR2Q9Y618 2525 aa14.82□□□□□ -0.04
UPF3A-204ENST00000475218 CACNG3O60359 315 aa14.82□□□□□ -0.04
UPF3A-204ENST00000475218 EPN2O95208 641 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms