RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 SP140Q13342 867 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 KHDC1Q4VXA5 237 aaKnown RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 EPHA10Q5JZY3 1008 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 AGAP9Q5VTM2 703 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 ZNF530Q6P9A1 599 aaPredicted RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 FAM180AQ6UWF9 173 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 Q6YL49 198 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 PLXDC1Q8IUK5 500 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 CELF5Q8N6W0 485 aaKnown RBP4.88□□□□□ -1.63
VPS13A-210ENST00000471439 MANSC1Q9H8J5 431 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 CHST12Q9NRB3 414 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 C1orf112Q9NSG2 853 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 KLHL11Q9NVR0 708 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 USP25Q9UHP3 1055 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 PCDHA3Q9Y5H8 950 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 FREM2Q5SZK8 3169 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 POLQO75417 2590 aa4.88□□□□□ -1.63
VPS13A-210ENST00000471439 LRRC37AA6NMS7 1700 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TPP1O14773 563 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TUSC2O75896 110 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 BBOX1O75936 387 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SPDEFO95238 335 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SBK3P0C264 359 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 MYOGP15173 224 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 ATP5JP18859 108 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 MGAT1P26572 445 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TNNT2P45379 298 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-210ENST00000471439 OCA2Q04671 838 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 PTPAQ15257 358 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SUPT20HL1Q3ZLR7 823 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TRIM60Q495X7 471 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 MAP3K21Q5TCX8 1036 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TSHZ3Q63HK5 1081 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 B3GNTL1Q67FW5 361 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-210ENST00000471439 KSR2Q6VAB6 950 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SLC39A5Q6ZMH5 540 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 TTC7BQ86TV6 843 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 RSPH3Q86UC2 560 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 DCLK2Q8N568 766 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SH2D3CQ8N5H7 860 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 FAM156AQ8NDB6 213 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 KCNG4Q8TDN1 519 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 CCDC136Q96JN2 1154 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 SERHL2Q9H4I8 314 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 ARMT1Q9H993 441 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 CERS4Q9HA82 394 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 ARNT2Q9HBZ2 717 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 GEMIN8Q9NWZ8 242 aaKnown RBP4.87□□□□□ -1.63
VPS13A-210ENST00000471439 POLLQ9UGP5 575 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 ANGPTL2Q9UKU9 493 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 CLCA2Q9UQC9 943 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 FAM50BQ9Y247 325 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 PLXNB2O15031 1838 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 CREBBPQ92793 2442 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 CEMIPQ8WUJ3 1361 aa4.87□□□□□ -1.63
VPS13A-210ENST00000471439 COL4A1P02462 1669 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ECM29Q5VYK3 1845 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ZFPL1O95159 310 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 CFIP05156 583 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 MALP21145 153 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 DDX6P26196 483 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13A-210ENST00000471439 SLC6A4P31645 630 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 PIP4K2AP48426 406 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-210ENST00000471439 HK3P52790 923 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 PURAQ00577 322 aaKnown RBP4.86□□□□□ -1.63
VPS13A-210ENST00000471439 SCAPQ12770 1279 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 RESTQ13127 1097 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 SNAPC2Q13487 334 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 VGLL4Q14135 290 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 HECTD2Q5U5R9 776 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 PPP4R3AQ6IN85 833 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 NPNTQ6UXI9 565 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 CHST15Q7LFX5 561 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-210ENST00000471439 HEATR3Q7Z4Q2 680 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ANKRD23Q86SG2 305 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ARHGEF19Q8IW93 802 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ADHFE1Q8IWW8 467 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 RHOT2Q8IXI1 618 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 KLHDC4Q8TBB5 520 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 TRIB2Q92519 343 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 NYXQ9GZU5 481 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 MOCS1Q9NZB8 636 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 ABCF2Q9UG63 623 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 FPGT-TNNI3KV9GXZ4 949 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 SH3TC1Q8TE82 1336 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 PHIPQ8WWQ0 1821 aa4.86□□□□□ -1.63
VPS13A-210ENST00000471439 NOTCH2Q04721 2471 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 COL12A1Q99715 3063 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 TCRBV7S2A1N4TA0A589 114 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 CDHR4A6H8M9 788 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 TMEM191CA6NGB0 347 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 SRRM3A6NNA2 597 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-210ENST00000471439 NT5C1B-RDH14C9J2C7 533 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 DIRC3C9JPN6 131 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 APAF1O14727 1248 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 LMNAP02545 664 aaKnown RBP4.85□□□□□ -1.63
VPS13A-210ENST00000471439 CD1AP06126 327 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 RHCEP18577 417 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 FGFR4P22455 802 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 CCND3P30281 292 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms