RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 VPS37BQ9H9H4 285 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 KRT82Q9NSB4 513 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 IL1RAPL1Q9NZN1 696 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 LMCD1Q9NZU5 365 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CHD7Q9P2D1 2997 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PCDHB2Q9Y5E7 798 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 TISP43B9A030 160 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 NBNO60934 754 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RGS20O76081 388 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CFBP00751 764 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ADRB2P07550 413 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 DHRS4L1P0CG22 281 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 TGFB3P10600 412 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ESRRAP11474 423 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CKBP12277 381 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ADRA1DP25100 572 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 HOXC8P31273 242 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PTPN7P35236 360 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 POLE2P56282 527 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 SESN3P58005 492 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 NFX1Q12986 1120 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 KLHL38Q2WGJ6 581 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 CELF3Q5SZQ8 465 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 MON1BQ7L1V2 547 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 HAUS6Q7Z4H7 955 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ARHGAP22Q7Z5H3 698 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 VSIG10LQ86VR7 867 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 C7orf31Q8N865 590 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PHC3Q8NDX5 983 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 EZH1Q92800 747 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 NKD2Q969F2 451 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RBM41Q96IZ5 413 aaKnown RBP9.99□□□□□ -0.81
HDAC3-205ENST00000469550 MFSD14AQ96MC6 490 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 ZNF577Q9BSK1 485 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 VCX3BQ9H321 246 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 KCNK13Q9HB14 408 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 VCX3AQ9NNX9 186 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 RABGEF1Q9UJ41 708 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 EXOC7Q9UPT5 735 aa9.99□□□□□ -0.81
HDAC3-205ENST00000469550 PRRC2BQ5JSZ5 2229 aaKnown RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 IPO5O00410 1097 aaKnown RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 KLF11O14901 512 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 LPXNO60711 386 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 LYPLA2O95372 231 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 ITGAVP06756 1048 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 DLDP09622 509 aaKnown RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 NSFP46459 744 aaKnown RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 ARSEP51690 589 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 NCKAP1LP55160 1127 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TAS2R40P59535 323 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 CDK18Q07002 472 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 PGM5Q15124 567 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 SNRNP35Q16560 246 aaKnown RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 LRRC38Q5VT99 294 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 PLEKHA7Q6IQ23 1121 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 RINLQ6ZS11 566 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 NET1Q7Z628 596 aaPredicted RBP9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TMPRSS6Q8IU80 811 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 ZBED8Q8IZ13 594 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TCP10LQ8TDR4 215 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 WDR60Q8WVS4 1066 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 ITFG2Q969R8 447 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 FBXL18Q96ME1 805 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 EPAS1Q99814 870 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TSSK1BQ9BXA7 367 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 ACSS3Q9H6R3 686 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 PCDH9Q9HC56 1237 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 DCTN4Q9UJW0 460 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TBC1D30Q9Y2I9 924 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 SCINQ9Y6U3 715 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 TRANK1O15050 2925 aa9.98□□□□□ -0.81
HDAC3-205ENST00000469550 SMAPO00193 183 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 TLL1O43897 1013 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 FAM155BO75949 473 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 GJB5O95377 273 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 ATP5BP06576 529 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 P4HBP07237 508 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 LYNP07948 512 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 POLR2MP0CAP2 368 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PIM1P11309 404 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 CRABP2P29373 138 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 SERPINB3P29508 390 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PGM1P36871 562 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 GPX6P59796 221 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PDIA2Q13087 525 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 GPS1Q13098 491 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 FASTKD3Q14CZ7 662 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PRKD1Q15139 912 aaPredicted RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 TRMT5Q32P41 509 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 WDR72Q3MJ13 1102 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 ADGRG6Q86SQ4 1221 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PDCD7Q8N8D1 485 aaKnown RBP9.97□□□□□ -0.81
HDAC3-205ENST00000469550 ATP11CQ8NB49 1132 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 CCDC110Q8TBZ0 833 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 TAS1R2Q8TE23 839 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 HAPLN3Q96S86 360 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 TMEM120AQ9BXJ8 343 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 GPAMQ9HCL2 828 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 PCMTD2Q9NV79 361 aa9.97□□□□□ -0.81
HDAC3-205ENST00000469550 DNPEPQ9ULA0 475 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms