RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 URGCPQ8TCY9 931 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 LPPQ93052 612 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 TMEM143Q96AN5 459 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 IGSF21Q96ID5 467 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 RPGRIP1Q96KN7 1286 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 HSD17B14Q9BPX1 270 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 EIF2AK1Q9BQI3 630 aaKnown RBP8.04□□□□□ -1.12
USP54-208ENST00000461520 BDH2Q9BUT1 245 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 NRDE2Q9H7Z3 1164 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 UBN1Q9NPG3 1134 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 ANKEF1Q9NU02 776 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 PCDHB2Q9Y5E7 798 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 DUSP10Q9Y6W6 482 aa8.04□□□□□ -1.12
USP54-208ENST00000461520 CNTNAP2Q9UHC6 1331 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 A0A1W2PQU0 124 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 TMEM221A6NGB7 291 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 BTBD18B2RXH4 712 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 M0R296 226 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 NEMFO60524 1076 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 CLASP2O75122 1294 aaKnown RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 ERLIN2O94905 339 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 LARGE1O95461 756 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 CTSAP10619 480 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 NCLP19338 710 aaKnown RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 HOXA11P31270 313 aaPredicted RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 CA8P35219 290 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 PTENP60484 403 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 ZXDAP98168 799 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 CYP4A11Q02928 519 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 NCBP1Q09161 790 aaKnown RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 LSAMPQ13449 338 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 TFDP1Q14186 410 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 TESK1Q15569 626 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 LONRF3Q496Y0 759 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 SLC35F1Q5T1Q4 408 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 CES5AQ6NT32 575 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 TMEM173Q86WV6 379 aaPredicted RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 TPH2Q8IWU9 490 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 SUGP1Q8IWZ8 645 aaKnown RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 DIS3L2Q8IYB7 885 aaKnown RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 VPS52Q8N1B4 723 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 CCDC51Q96ER9 411 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 NECTIN4Q96NY8 510 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 KRTAP4-11Q9BYQ6 195 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 ZBP1Q9H171 429 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 TTC12Q9H892 705 aaPredicted RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 MINDY3Q9H8M7 445 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 RSAD1Q9HA92 442 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 XPNPEP1Q9NQW7 623 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 COA3Q9Y2R0 106 aaPredicted RBP8.03□□□□□ -1.12
USP54-208ENST00000461520 NR2E1Q9Y466 385 aa8.03□□□□□ -1.12
USP54-208ENST00000461520 ZFHX2Q9C0A1 2572 aaPredicted RBP8.02□□□□□ -1.13
USP54-208ENST00000461520 CACNA1HO95180 2353 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.02□□□□□ -1.13
USP54-208ENST00000461520 AGRPO00253 132 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 JAK2O60674 1132 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 ALDH2P05091 517 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 XRCC6P12956 609 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP54-208ENST00000461520 SLC11A1P49279 550 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 PLP2Q04941 152 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 SIGLEC14Q08ET2 396 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 TCF15Q12870 199 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 SAFBQ15424 915 aaKnown RBP eCLIP8.02□□□□□ -1.13
USP54-208ENST00000461520 UBXN11Q5T124 520 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 NOTUMQ6P988 496 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 ZNF761Q86XN6 746 aaPredicted RBP8.02□□□□□ -1.13
USP54-208ENST00000461520 ZNF280BQ86YH2 543 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 CCDC43Q96MW1 224 aaKnown RBP8.02□□□□□ -1.13
USP54-208ENST00000461520 FAM193BQ96PV7 902 aaPredicted RBP8.02□□□□□ -1.13
USP54-208ENST00000461520 MTMR9Q96QG7 549 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 TMEM175Q9BSA9 504 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 APOL5Q9BWW9 433 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 NFKBIZQ9BYH8 718 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 EPN3Q9H201 632 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 DNAJB4Q9UDY4 337 aa8.02□□□□□ -1.13
USP54-208ENST00000461520 INO80B-WBP1J3KQ70 363 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 INPPL1O15357 1258 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 TSPAN1O60635 241 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 DDHD2O94830 711 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 THBS2P35442 1172 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 ARL2P36404 184 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 MTHFRP42898 656 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 RARRES1P49788 294 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 ST3GAL1Q11201 340 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 ORC2Q13416 577 aaPredicted RBP8.01□□□□□ -1.13
USP54-208ENST00000461520 CAPSQ13938 189 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 PTPN14Q15678 1187 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 PTPN21Q16825 1174 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 DDR2Q16832 855 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 ZFYVE27Q5T4F4 411 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 KIAA1841Q6NSI8 718 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 ZC3H18Q86VM9 953 aaKnown RBP8.01□□□□□ -1.13
USP54-208ENST00000461520 HACE1Q8IYU2 909 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 KYQ8NBH2 561 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 AUTS2Q8WXX7 1259 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 RIPOR3Q96MK2 946 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 PRRX2Q99811 253 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 IER2Q9BTL4 223 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 CSRNP2Q9H175 543 aa8.01□□□□□ -1.13
USP54-208ENST00000461520 POMKQ9H5K3 350 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms