RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 SPAG5Q96R06 1193 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 ZNF518BQ9C0D4 1074 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 RTN4Q9NQC3 1192 aaKnown RBP13.23□□□□□ -0.29
HDAC4-207ENST00000461113 KRT82Q9NSB4 513 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 FAM207AQ9NSI2 230 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-207ENST00000461113 HMGXB4Q9UGU5 601 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 MAGED2Q9UNF1 606 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-207ENST00000461113 SMG1Q96Q15 3661 aaKnown RBP13.23□□□□□ -0.29
HDAC4-207ENST00000461113 VWA8A3KMH1 1905 aa13.23□□□□□ -0.29
HDAC4-207ENST00000461113 ITPR1Q14643 2758 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 SLC38A8A6NNN8 435 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 F8VP50 259 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 ARNTLO00327 626 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CLDN5O00501 218 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 SOAT2O75908 522 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 RTN3O95197 1032 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-207ENST00000461113 VNN2O95498 520 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CCDC172P0C7W6 258 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CEACAM1P13688 526 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 UCHL3P15374 230 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 KPNA1P52294 538 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-207ENST00000461113 PLCB2Q00722 1185 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 KCNMA1Q12791 1236 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 ARHGAP17Q68EM7 881 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 DENND5BQ6ZUT9 1274 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 FUKQ8N0W3 1084 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 NUP93Q8N1F7 819 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CSGALNACT1Q8TDX6 532 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 DEPDC1BQ8WUY9 529 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 KAT5Q92993 513 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 KREMEN1Q96MU8 473 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 ERGIC2Q96RQ1 377 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 TWNKQ96RR1 684 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 LPIN3Q9BQK8 851 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 STK33Q9BYT3 514 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 GPR88Q9GZN0 384 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 HSD3B7Q9H2F3 369 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 PDCL3Q9H2J4 239 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CRISPLD1Q9H336 500 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 COMMD8Q9NX08 183 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CEP72Q9P209 647 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 ZMYM5Q9UJ78 669 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 CEP83Q9Y592 693 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 NME7Q9Y5B8 376 aa13.22□□□□□ -0.29
HDAC4-207ENST00000461113 DMXL2Q8TDJ6 3036 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 ASH1LQ9NR48 2969 aaKnown RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 NCANO14594 1321 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 HYAL3O43820 417 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 MICAL2O94851 1124 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 ACO1P21399 889 aaKnown RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 CCR2P41597 374 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 PPP3CCP48454 512 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 BCAT1P54687 386 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 MLLT6P55198 1093 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 MAP3K7CLP57077 242 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 POLR2FP61218 127 aaKnown RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 DRAP1Q14919 205 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 CNGA2Q16280 664 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 PPP1R26Q5T8A7 1209 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 GJB7Q6PEY0 223 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 TXNDC11Q6PKC3 985 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 MFSD6LQ8IWD5 586 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 ANKRD52Q8NB46 1076 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 TTC8Q8TAM2 541 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 SHC3Q92529 594 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 MRPS31Q92665 395 aaKnown RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 SLITRK1Q96PX8 696 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 NUP58Q9BVL2 599 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 DUSP16Q9BY84 665 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 ATXN3LQ9H3M9 355 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 FBXO44Q9H4M3 255 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 SLITRK6Q9H5Y7 841 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 C8orf33Q9H7E9 229 aaPredicted RBP13.21□□□□□ -0.29
HDAC4-207ENST00000461113 NEUROG3Q9Y4Z2 214 aa13.21□□□□□ -0.29
HDAC4-207ENST00000461113 RALGAPA1Q6GYQ0 2036 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 A0A1B0GTH6 734 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 A0A1W2PQC6 194 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 THAP12O43422 761 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 NOL4O94818 638 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 ATF6P18850 670 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 CSRP1P21291 193 aaKnown RBP13.2□□□□□ -0.3
HDAC4-207ENST00000461113 YWHAQP27348 245 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 GABRR2P28476 465 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 GNA15P30679 374 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 KRT9P35527 623 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 STAT1P42224 750 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 GPR15P49685 360 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 PDE6CP51160 858 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 SNX16P57768 344 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 IFRD2Q12894 506 aaPredicted RBP13.2□□□□□ -0.3
HDAC4-207ENST00000461113 CCDC142Q17RM4 750 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 GOLGA7BQ2TAP0 167 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 PLK5Q496M5 336 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 SDHAF4Q5VUM1 108 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 C1orf228Q6PIY5 440 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 PDZD3Q86UT5 571 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 UBR7Q8N806 425 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 PDZD8Q8NEN9 1154 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 IQCDQ96DY2 449 aa13.2□□□□□ -0.3
HDAC4-207ENST00000461113 MSANTD3Q96H12 275 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms