RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 RPGRIP1Q96KN7 1286 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PEBP4Q96S96 227 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DDX23Q9BUQ8 820 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 UBXN6Q9BZV1 441 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 FAM204AQ9H8W3 233 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CALCOCO1Q9P1Z2 691 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 STAP1Q9ULZ2 295 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 NR2E3Q9Y5X4 410 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TSC2P49815 1807 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 A0A1W2PQH9 124 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TNFRSF10BO14763 440 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DAB1O75553 588 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 VNN2O95498 520 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 FYNP06241 537 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ELF1P32519 619 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 NOS2P35228 1153 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 GTF2F1P35269 517 aaKnown RBP eCLIP3.87□□□□□ -1.79
RTN4-208ENST00000404909 SCNN1AP37088 669 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TERF1P54274 439 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 YWHAGP61981 247 aaKnown RBP eCLIP3.87□□□□□ -1.79
RTN4-208ENST00000404909 DEUP1Q05D60 604 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SNX1Q13596 522 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 KRT81Q14533 505 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ACAP1Q15027 740 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ZC3H12AQ5D1E8 599 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 LRRC38Q5VT99 294 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CCDC70Q6NSX1 233 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 C8orf74Q6P047 294 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RNF168Q8IYW5 571 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 RCOR2Q8IZ40 523 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 EXD1Q8NHP7 514 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ZNF461Q8TAF7 563 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 HDAC7Q8WUI4 952 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 C1orf54Q8WWF1 131 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ATG4AQ8WYN0 398 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 FBXO32Q969P5 355 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 HAUS1Q96CS2 278 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RBM41Q96IZ5 413 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 C8orf48Q96LL4 319 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SLITRK1Q96PX8 696 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TCF25Q9BQ70 676 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 HERPUD2Q9BSE4 406 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 C17orf80Q9BSJ5 609 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 LRRC1Q9BTT6 524 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MAGEB5Q9BZ81 275 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 OSBPL8Q9BZF1 889 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PNPLA8Q9NP80 782 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 ENTPD7Q9NQZ7 604 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TMPRSS4Q9NRS4 437 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DDIT4Q9NX09 232 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DDX56Q9NY93 547 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.87□□□□□ -1.79
RTN4-208ENST00000404909 BACE2Q9Y5Z0 518 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 COL4A6Q14031 1691 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 LTBP2Q14767 1821 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 LINC01553A4QN01 128 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DPYSL4O14531 572 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TEX28O15482 410 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SEC24AO95486 1093 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CXCL14O95715 111 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 EFEMP2O95967 443 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CA3P07451 260 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 GLI1P08151 1106 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 HAPLN1P10915 354 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 YWHAQP27348 245 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MAGEA11P43364 429 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PTPN9P43378 593 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RPL10AP62906 217 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 ADCY2Q08462 1091 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SMARCB1Q12824 385 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MMRN1Q13201 1228 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 SHHQ15465 462 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 BOLA3Q53S33 107 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 TFDP3Q5H9I0 405 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PLPP4Q5VZY2 271 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PM20D1Q6GTS8 502 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 POLNQ7Z5Q5 900 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CCDC185Q8N715 623 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PHOSPHO2Q8TCD6 241 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 RNF139Q8WU17 664 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CLP1Q92989 425 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 MAGOHBQ96A72 148 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 HERC2P3Q9BVR0 1158 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 MAK16Q9BXY0 300 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 OXCT2Q9BYC2 517 aaPredicted RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 FBXO44Q9H4M3 255 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 DHX35Q9H5Z1 703 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 CERS4Q9HA82 394 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 NMUR1Q9HB89 426 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 PIGVQ9NUD9 493 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 GMIPQ9P107 970 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 AFF4Q9UHB7 1163 aaKnown RBP3.87□□□□□ -1.79
RTN4-208ENST00000404909 SFMBT1Q9UHJ3 866 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 AMACRQ9UHK6 382 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 USP3Q9Y6I4 520 aa3.87□□□□□ -1.79
RTN4-208ENST00000404909 CARNS1A5YM72 827 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 MSI1O43347 362 aaKnown RBP3.86□□□□□ -1.79
RTN4-208ENST00000404909 CAPN15O75808 1086 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 TBX18O95935 607 aa3.86□□□□□ -1.79
RTN4-208ENST00000404909 CNPP09543 421 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms