RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ZNF180Q9UJW8 692 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 LCTP09848 1927 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 HMX2A2RU54 273 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 C2CD4BA6NLJ0 364 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ZBTB42B2RXF5 422 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 I3L4J1 428 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 GRAP2O75791 330 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 NFICP08651 508 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CSH1P0DML2 217 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CSH2P0DML3 217 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 SKIP12755 728 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ERFP50548 548 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 TEX44Q53QW1 395 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ATF7IP2Q5U623 682 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 OR52E8Q6IFG1 317 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 DPH6Q7L8W6 267 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 TRIM50Q86XT4 487 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ZBTB8OSQ8IWT0 167 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
SHMT1-205ENST00000395684 TMEM176AQ96HP8 235 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 CLPTM1LQ96KA5 538 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 ZNF112Q9UJU3 913 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 HEY1Q9Y5J3 304 aa13.2□□□□□ -0.3
SHMT1-205ENST00000395684 DCAF8L1A6NGE4 600 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 SLC15A5A6NIM6 579 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 A8MXQ7 604 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 MAGEC1O60732 1142 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 CILPO75339 1184 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 HMGCRP04035 888 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 APRTP07741 180 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 PDGFRAP16234 1089 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 GPD1P21695 349 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 AQP5P55064 265 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 EN1Q05925 392 aaPredicted RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 KDSRQ06136 332 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 TFDP2Q14188 446 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 RNF220Q5VTB9 566 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 TRMT10BQ6PF06 316 aaKnown RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 PQLC3Q8N755 202 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 SMC1BQ8NDV3 1235 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 PHC3Q8NDX5 983 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 CCDC110Q8TBZ0 833 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 ZBTB10Q96DT7 871 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 CNPY3Q9BT09 278 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 GPATCH2LQ9NWQ4 482 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 PLA2G4CQ9UP65 541 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 ASB3Q9Y575 518 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 KAT6AQ92794 2004 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 TOP3BO95985 862 aaKnown RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 OSBPP22059 807 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 CCNFP41002 786 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 MXD4Q14582 209 aaPredicted RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 LY6KQ17RY6 165 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 FAM160B1Q5W0V3 765 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 MAP1SQ66K74 1059 aaPredicted RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 UNC5AQ6ZN44 842 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 EEPD1Q7L9B9 569 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 NUDCD3Q8IVD9 361 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 SEPT1Q8WYJ6 367 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 RTP4Q96DX8 246 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 PIDD1Q9HB75 910 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 SPATS2LQ9NUQ6 558 aaKnown RBP13.19□□□□□ -0.3
SHMT1-205ENST00000395684 ETNK2Q9NVF9 386 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 ZNF212Q9UDV6 495 aa13.19□□□□□ -0.3
SHMT1-205ENST00000395684 INO80B-WBP1J3KQ70 363 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 ACKR2O00590 384 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 TRDMT1O14717 391 aaKnown RBP13.18□□□□□ -0.3
SHMT1-205ENST00000395684 APOEP02649 317 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 ITGB3P05106 788 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 CYP3A5P20815 502 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 ATG16L1Q676U5 607 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 CXorf38Q8TB03 319 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 HEXIM2Q96MH2 286 aaKnown RBP13.18□□□□□ -0.3
SHMT1-205ENST00000395684 NLRP4Q96MN2 994 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 PANX3Q96QZ0 392 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 CCDC106Q9BWC9 280 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 INO80BQ9C086 356 aaPredicted RBP13.18□□□□□ -0.3
SHMT1-205ENST00000395684 FZD8Q9H461 694 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 MINDY3Q9H8M7 445 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 HOXC10Q9NYD6 342 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 C19orf81C9J6K1 198 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 PRPSAP2O60256 369 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 SMIM24O75264 130 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 FESP07332 822 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 IQCF3P0C7M6 154 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 KRT81Q14533 505 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 LGSNQ5TDP6 509 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 MROH9Q5TGP6 573 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 FAM183BPQ6ZVS7 135 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 SCUBE1Q8IWY4 988 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 TRIM42Q8IWZ5 723 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 ARHGAP24Q8N264 748 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 MPP5Q8N3R9 675 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 PCDH19Q8TAB3 1148 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 TRAPPC12Q8WVT3 735 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 TEKT4Q8WW24 435 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 IFT43Q96FT9 208 aa13.18□□□□□ -0.3
SHMT1-205ENST00000395684 EBF4Q9BQW3 602 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms